Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d14
(420 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56460.1 68418.m07047 protein kinase, putative contains prote... 30 0.73
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 29 1.7
At2g03070.1 68415.m00260 expressed protein 28 2.2
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 28 3.0
At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA methyltran... 27 5.2
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 27 6.8
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 27 6.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 6.8
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 27 6.8
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 26 9.0
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 26 9.0
>At5g56460.1 68418.m07047 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 408
Score = 29.9 bits (64), Expect = 0.73
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 107 PSIRCSFEPMTANSRVLIRTAHC-NRQPAARPLQED 3
P + C + P+ A + + HC NR P ARPL D
Sbjct: 317 PKMNCEY-PVKAVQKAAMLAYHCLNRNPKARPLMRD 351
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 242 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 367
+K W N HL+KAG + N D ++G LL ++ E
Sbjct: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAYLLNALAPE 313
>At2g03070.1 68415.m00260 expressed protein
Length = 524
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +1
Query: 211 SPRPGLGETTEKDIHGMVQQSPQKSWHRHREHRGRLPQWLKAH------AAAGGHLRRDS 372
S GLG++ +H M Q+ QK H +H+ Q + AH +GGH++
Sbjct: 334 SSMQGLGQSQIPALHDMHGQAQQKFQTSHGQHQMPYSQPMGAHQQFQARQLSGGHIQHSM 393
Query: 373 AQAR 384
+Q +
Sbjct: 394 SQGQ 397
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 242 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 367
+K W N HL+KAG + N D ++G LL ++ E
Sbjct: 264 EKLLLKWMNFHLKKAGYEKQVTNFSSDVKDGEAYAYLLNALAPE 307
>At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA
methyltransferase family protein low similarity to
SP|Q9P804 N(2),N(2)-dimethylguanosine tRNA
methyltransferase (EC 2.1.1.32)
(tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 433
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 161 TRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSRVLI 54
T H +P+C S S S++CSF+ + S V I
Sbjct: 17 TVHKSQNPKCKSPDSCRFKSLKCSFDRILVKSEVQI 52
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 242 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 367
+K W N HL+K G + N D ++ LL V++ E
Sbjct: 271 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPE 314
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 224 PGLGDPHAPIPPLVPCNRPGTTRHSCLSP 138
P LGDPH P P P T+ H L P
Sbjct: 3 PSLGDPHHP-PQFTPFPHFPTSNHHPLGP 30
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 257 P*MSFSVVSPRPGLGDPHAPIPPLVPCNRPGTTRHSCLSPRCPSS 123
P S S SP P P +P PP P + P ++ LSP PSS
Sbjct: 49 PPSSLSPSSPPPLSLSPSSPPPP-PPSSSPLSSLSPSLSPSPPSS 92
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 19 RAAGCLLQCAVRINTREF 72
+A CL C V INTR+F
Sbjct: 563 KAIDCLANCEVEINTRQF 580
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 242 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 367
+K W N HL+K G + N D ++ LL V++ E
Sbjct: 272 EKVLLKWMNFHLKKGGYKKTVGNFSSDLKDAQAYAYLLNVLAPE 315
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 233 SPRPGLGDPHAPIPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSF 87
SP P H+P PP+V + P H P P P P I S+
Sbjct: 703 SPPPAPVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVIGVSY 751
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,359,653
Number of Sequences: 28952
Number of extensions: 162574
Number of successful extensions: 560
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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