Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d12
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   6.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.0  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   6.0  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   7.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   7.9  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.9  

>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 567 YRILYFVFDNFVSCKILFCEYIFSLGSFI 481
           YRI Y     +VSC   FCE+I   G ++
Sbjct: 204 YRIPYGGLFQYVSCPNYFCEWIEWFGCYL 232


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 GFVNGTTFHQFL*KIRGKKCIHRKGF 524
           G+V G  F+ FL +I G+K I  +GF
Sbjct: 402 GYVPGYWFNVFLVEILGRKWIQLQGF 427


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 305 HPSNLSISLRYADEHSTIWPLPDITSFCLANILKAPSFDVK*TIISSENITT 150
           HPS  + S+ Y D      PL     F LA  L   S     T + +E +T+
Sbjct: 48  HPSTHNSSVAYVDSQDNKPPLVSTLHFSLAPSLSPSSAQSHNTALITEPLTS 99


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 GFVNGTTFHQFL*KIRGKKCIHRKGF 524
           G+V G  F+ FL +I G+K I  +GF
Sbjct: 403 GYVPGYWFNVFLVEILGRKWIQLQGF 428


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 111 PKKQYSPKSTLSCSSNIFTTYYSLFY 188
           P+   S +ST++  SN+  TYY  ++
Sbjct: 62  PRNSASCESTITLQSNLLFTYYKHYF 87


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 454 SMGQHFINFYKRSEGKNVFTEKDFTTYKVVKNKIKYS 564
           S+G  ++NF+   +G+    E ++T  K    +I +S
Sbjct: 120 SLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 479 KLMKCCPIDKAPLCRS 432
           K+M+C P+DK PL +S
Sbjct: 816 KVMECEPVDKLPLSQS 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,557
Number of Sequences: 5004
Number of extensions: 47277
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)