Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d12
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)              81   6e-16
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    29   2.0  
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
 Frame = +1

Query: 214 FAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQCKRFVTDKVITDKEVDELLMIAXXX 393
           F   ++ +S K   V+CS+ Y     KF+ C PK+C R V D V++ +E   L  +A   
Sbjct: 4   FVSVDDSVSRKFLNVKCSNDYGT---KFKSCVPKKCGRAVMDDVVSFEEAVYLADLAKRG 60

Query: 394 XXXXXXXXXXXILDLHSGALSMGQHFINFY---KRSEGKNVFTEKDFTTYKVVKNKIKYS 564
                      ILDLHSGAL+ G+ F+N Y   K+ +   +FT+KDF  YK VKNKIK +
Sbjct: 61  MKHGGSSGGPTILDLHSGALTYGEKFVNIYTLAKKLKTGELFTKKDFEVYKQVKNKIKNA 120

Query: 565 I 567
           I
Sbjct: 121 I 121


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 52  VPANLWNGCTDFDRTFTDRSPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKIFAKQN 228
           +P +LW       +   D +P+S    RVL+ +  +F+L++I  +T+N  AF  F  QN
Sbjct: 579 LPNSLWFATGSILQQGGDNTPRSGSG-RVLAASFWLFTLILISTYTANLAAF--FTAQN 634


>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 109 SPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISG 243
           +P+S    RVL      F+++I+  +T+N  AF +  +   V+SG
Sbjct: 90  TPRS-FSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPKAVVSG 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,144
Number of Sequences: 59808
Number of extensions: 308809
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)