Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d11
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.52 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    28   1.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   8.4  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   8.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.4  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   8.4  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   8.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   8.4  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 450 MKLQNSVYMFLGIFQR-SSLSETYSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 286
           +KL N + M+   F    +  +TYSL   S +  N+    +F N   SN+I  +Q+
Sbjct: 345 IKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVNQY 400


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 391 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCV 570
           +ER    + KK  Y++LQ   +E  Q +  M D  +   L  I  Q     ++  + L  
Sbjct: 62  KERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAE 121

Query: 571 VSRE 582
           + R+
Sbjct: 122 IERD 125


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 31  SDFMEENIQKFNNERRSSKQWVKLNVG 111
           +D  EEN   F  E  S  +W K+ +G
Sbjct: 485 TDLQEENSVSFAQEDNSLSRWEKIPIG 511


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 4   YAMAEHIDCSDFMEENIQKFNNE--RRSSKQWVK 99
           + +A H+ C DF   N+Q+ +    R +   W++
Sbjct: 55  WKLATHVICDDFSSPNVQEGSKRSLRLAKTNWIR 88


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 181  QEDSDLISDRDETGAYLIDRDPTYFSPVL 267
            ++DS+ +   D+   Y +   PTY +P L
Sbjct: 1289 EKDSEFLQHLDQNRGYSLTGTPTYMAPEL 1317


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 337 EFYNITELIRLVKERICLRERRPLKDS-KKHVYRVLQFHEEELTQMVSTMSDGWKFEQLI 513
           E+ +I  L+ +V +    ++ R L+    KHV R+L   +  L+     +S  W+ + +I
Sbjct: 86  EWSSIDSLVPIVVDLPSKKQNRLLQSCITKHVDRLLDLCKRNLSTFTIDISSSWR-QNII 144

Query: 514 NIGSQYNYGNDEHAEFLCVVSRECGSTL 597
                    N+E  EF C  +   G  L
Sbjct: 145 E--------NNEQKEFECTSTAITGCLL 164


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 345 VEFCFFENPFFSNIIVNHQF 286
           +EF F ENPFF+N I+   +
Sbjct: 208 LEFEFAENPFFTNKILTKTY 227


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 394 ERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAE 558
           + RP +D K    RVL+  ++ L    + M      +  INI  +Y Y  D+H E
Sbjct: 657 DSRPFQDPK----RVLECLQKSLKIADACMDQLTSLKLFINILERYFYYYDQHCE 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,186
Number of Sequences: 5004
Number of extensions: 50541
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)