Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d11
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 58 7e-09
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 53 2e-07
02_04_0590 - 24154366-24155742 44 1e-04
07_03_0093 + 13330867-13332312 38 0.006
05_01_0553 + 4849535-4849553,4850727-4851913 29 2.8
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 3.7
06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561 28 4.9
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 6.5
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 27 8.6
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 27 8.6
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825... 27 8.6
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 57.6 bits (133), Expect = 7e-09
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +1
Query: 79 SSKQWVKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYF 255
SS V LN+GG + TT TL R+P+S L + L D TG +DRD +F
Sbjct: 8 SSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPD-TGMVFVDRDGKHF 66
Query: 256 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERI 384
VLN+LR G + ++ + +L EAE+Y + L + +R+
Sbjct: 67 RHVLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCINDRL 109
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 94 VKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 270
+ LN+GG+ + TT TL RDP S L + + E GA +DRD F VLN
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64
Query: 271 YLRHGKLVINNDIAEEGVLEEAEFYNI 351
+LR G + D +L EAE+Y +
Sbjct: 65 WLRDGAVPALADAEYRQLLREAEYYRL 91
>02_04_0590 - 24154366-24155742
Length = 458
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +1
Query: 94 VKLNVGGTYFLTTKTTLCR-DPNSFLYRLVQEDSDLISDRD---ETGA--YLIDRDPTYF 255
V+LNVGG F T +TL ++ L ++ + D E GA Y IDRDP F
Sbjct: 8 VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECF 67
Query: 256 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVK 375
+ +L+ LR G L + +A+ + EA +Y + + +R +
Sbjct: 68 AVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAAR 107
>07_03_0093 + 13330867-13332312
Length = 481
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 94 VKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLNY 273
V LNVGG F TT TL R S ++ + + +DRDP F+ +L++
Sbjct: 6 VTLNVGGEVFQTTVATLSRAGAS-------SPLASLAPTPASAPHFLDRDPRLFATLLSF 58
Query: 274 LRHGKLV---INNDIAEEGVLEEAEFYNI 351
LR G+L ++D +L EA + +
Sbjct: 59 LRRGRLAPTSPDSDPPSPALLAEARHFGV 87
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
Frame = +1
Query: 181 QEDSDLISDRDETGAYLIDRDPTYFSPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITEL 360
QED ++ T +I P Y + ++ G ++ ++ + +E + ++ N +
Sbjct: 10 QEDGSSNHSKNSTLVTIIRERPDY-KTLTHHDLLGHIIAHDMLMQESK-DVIQYINQSST 67
Query: 361 IRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYG 540
+ KE + L+ + ++ + + +EE+ V + GS +Y
Sbjct: 68 ASIKKEDLALKAKEEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYS 127
Query: 541 N---DEHAEFLCVVSRECG 588
N H+ +C V +E G
Sbjct: 128 NKSSGRHSARVCYVCKEPG 146
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = +1
Query: 310 AEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSD 489
A E VL + ++ T+++ KE + R R + DS+ + L + L + +
Sbjct: 101 AREIVLSQIPYFCKTDIVVKCKEALKKR-LRAINDSRAQKRKALSQPNKRLRSLSEHVPH 159
Query: 490 GWKFEQLINIGSQYN 534
G++ + L+++ ++YN
Sbjct: 160 GYRRKSLLDVLTRYN 174
>06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561
Length = 202
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 259 VKNMSGLYLLNKRQSHPCLISSHYP 185
V+ M G L ++R+ HP LI+ H P
Sbjct: 108 VQRMGGPQLFSQRRGHPALIARHRP 132
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 25 DCSDFMEENIQKFNNERRSSKQWVKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSD 195
+C + ++ I+ + VK N G YF+ TLC P+ L+R + + D
Sbjct: 664 ECIEQLQFLIEDAQKDEALHVSEVKSNDLGFYFMRFINTLCNIPSVSLFRTLSSNDD 720
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -3
Query: 446 NCRTLYTCFLESFKGLLSLRHILSLTNLISSVML 345
N + T LES +GL SLRHI NL+S ML
Sbjct: 1060 NILPVLTTLLESMQGLTSLRHI----NLMSCPML 1089
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 17 SILTVVILWKKIYKNLIMKGGVANNGSN 100
+I+ ++++W + L++ GG+A SN
Sbjct: 380 TIIVIILIWALVTSPLLVLGGIAGKNSN 407
>01_06_0517 +
29981537-29981927,29982024-29982231,29982373-29982544,
29984468-29984533,29984658-29984771,29984880-29984996,
29985097-29985223,29985317-29985603,29985701-29985891,
29985981-29986063,29986175-29986251,29986729-29986896
Length = 666
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 437 TLYTCFLESFKGLLSLRHILSLTNLIS 357
T L+ FKGLL ++H + T++IS
Sbjct: 220 TAMIIILQQFKGLLGMKHFTTKTDIIS 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,233
Number of Sequences: 37544
Number of extensions: 278988
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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