Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d09
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    29   0.49 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   1.5  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   2.6  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   8.0  

>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 172 ISSCF*QPHSGNLNLFVFVVLNDEITCESANTQNKVRNIKGTIRSIVLT 26
           I +C   PH  +++ F+  ++NDE    + NT + ++  KG     +LT
Sbjct: 237 IYNCVGHPHPSDIDYFLKSIMNDEFVI-AFNTISSIKQQKGLALQDILT 284


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  KNDGAYCSFNISHFVLCVCGFTSDLI 106
           KN GA C FN +  VLC C    D+I
Sbjct: 211 KNLGATCFFNSTLQVLCACEALHDVI 236


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 430 ILPIVDANETNSVARFRIIDIR*IN-VNAGFRNAHAKVLVTD 552
           ++PIV+ N+T SV   R  D   ++ + AG  NA    L+TD
Sbjct: 137 VVPIVNENDTLSVQEIRFGDNDTLSAITAGMINADYLFLLTD 178


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 318 SYLLPEVGDFVRAPIPRVPSSVADVPN 398
           +Y+   V DF + P+P +PSS    P+
Sbjct: 162 NYIESTVDDFPKDPLPPIPSSPKCAPD 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,294
Number of Sequences: 5004
Number of extensions: 55467
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)