Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d09
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0691 - 27302196-27302581,27302683-27302854                       32   0.29 
03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918...    29   2.0  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    29   2.7  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    28   4.7  
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658...    28   4.7  
02_02_0643 + 12590928-12592172,12592609-12592698                       28   6.2  
10_02_0188 - 6473353-6473432,6473619-6474816                           27   8.2  

>04_04_0691 - 27302196-27302581,27302683-27302854
          Length = 185

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 346 SFALQYLEYHHPSQMYRIAYAKCRTADAILPIVDANET 459
           +   QY +YH  S++    Y  C TA A+L   D N T
Sbjct: 56  TLVFQYSKYHTLSEVDEAGYRNCSTASAVLSSSDGNTT 93


>03_05_0812 +
           27890030-27890219,27890618-27890916,27891603-27891840,
           27892098-27892433,27892522-27892607,27892703-27892810,
           27892918-27893225,27893304-27893567,27893660-27894431
          Length = 866

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 255 LNILDLPFLASFASSIPIEAYSYLLPEVGDFV-RAPIPRV 371
           L + D+P L       P++    LLP  GD++ + P+P++
Sbjct: 313 LKLPDVPALEELRKRFPLQLVKDLLPAAGDYILKLPMPQI 352


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = +3

Query: 141 PLCGCQKQLEMPNYGSGVPI----DSNFNCGCIDACGCQVPYLNILDLPFLASFASSIPI 308
           P+C    QL +  Y   VP+     S  N      C   +P+ NIL  P     A  + +
Sbjct: 421 PICTSPNQLNITQYCQSVPVIVPDGSASNATVCPPCSTDLPFENILMSPIRCICAIPLYV 480

Query: 309 EAYSYLLPEVGDFV 350
           + Y    P   DFV
Sbjct: 481 D-YRLKSPGFWDFV 493


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/87 (21%), Positives = 37/87 (42%)
 Frame = -1

Query: 504 IYSADIYNSEPGHRICFVGIHNRQYGIRSSAFGIRNSVHLRRMMVLEVLERERSHRLLAI 325
           I+  +      GH +   G    +Y +    F +++ V    ++VLE+L  +R+  +   
Sbjct: 250 IFEEESNEVNTGHVVGTYGYMAPEYAMEG-VFSVKSDVFSLGVLVLEILSGQRNGAMYLQ 308

Query: 324 NNYKPR*V*NWQMMLEKVNLECLDTGL 244
           NN +      W++  E    E +D  L
Sbjct: 309 NNQQTLIQDAWKLWNEDKAAEFMDASL 335


>02_04_0281 +
           21563588-21563696,21565053-21565708,21565793-21565879,
           21566487-21567461,21567640-21567786
          Length = 657

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 303 PIEAYSYLLPEVGDFVRAPIPRVPSSVADVPN--CVCQMPNCGCHIA-DC 443
           PI+A+  L+P      RAP+    S V+   N   + +  NC  H A DC
Sbjct: 302 PIKAHQSLIPSTNGSARAPVKTDLSKVSHAGNLKILTREQNCTIHTAKDC 351


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 475 TGPPNLFRWHPQSAIWHPQFGIWHTQF 395
           +G PN+  W P  + W PQ   W + F
Sbjct: 161 SGKPNIMFWRPGMSDWVPQMLKWDSGF 187


>10_02_0188 - 6473353-6473432,6473619-6474816
          Length = 425

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +3

Query: 471 PVQNYRYPLNKCECRIPE--CA--CQGFGYGCPNCARP 572
           PV   R    K +CR+ E  C   CQG G+    C RP
Sbjct: 280 PVPGQRNQNEKRKCRVREDICCFNCQGMGHFADKCPRP 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,180
Number of Sequences: 37544
Number of extensions: 368702
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)