Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d09
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    33   0.14 
At1g32190.1 68414.m03959 expressed protein                             31   0.42 
At1g52780.1 68414.m05966 expressed protein                             29   1.7  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    29   2.2  
At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At3g21170.1 68416.m02674 F-box family protein contains Pfam prof...    27   6.8  
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At1g80310.1 68414.m09402 expressed protein                             27   9.0  

>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1215

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 135  RLPLCGCQKQLEMPNYGSGVPIDSNFNCGCIDACGCQVPYLNILDLPF 278
            RL L GC K + +P     + I    NCG ++  GC     NI  L F
Sbjct: 1004 RLKLSGCGKLVSLPQLSDSLIILDAENCGSLERLGCSFNNPNIKCLDF 1051


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
 Frame = +3

Query: 372 PSSVADVPNCVCQMPNCGCHIADCGCQRNKFGGPVQNYRYPLNKCECRIPECACQGFG-- 545
           PS     P C     +CGC   DCGC   K   P     +   K    +  C C  F   
Sbjct: 303 PSCSCPKPRCPKPSCSCGCGCGDCGC--FKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCS 360

Query: 546 --YGCPNCAR 569
             +G P C +
Sbjct: 361 SCFGKPKCPK 370


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 298 ELANDARKGKSRM-FRYGTWHPQASIQPQLKFESIGT 191
           +++   RK K  + FRYG W+  +   P L F+S  T
Sbjct: 76  DISRTPRKSKRNLGFRYGDWNQDSGDSPILPFDSTNT 112


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +3

Query: 102 SSFKTTKTNKFRLPLCGCQKQLEMPNYGSGVPIDSNFNCGCIDACGCQVPYLN 260
           SS K ++T K   P+ GC         GS  P   N NC CI      +PYLN
Sbjct: 415 SSLKYSETFKLTQPVIGCSCS------GSCSP--GNHNCSCIRKNDGDLPYLN 459


>At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1301

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 488 SIILNRATEFVSLASTIGNMASAVR 414
           S+ILN     V+L STIGN+   VR
Sbjct: 800 SLILNNCKSLVTLPSTIGNLHRLVR 824


>At3g21170.1 68416.m02674 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 394

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 483 NSEPGHRICFVGIHNRQYGIRSSAFGIRNSV 391
           ++ P H +  V I ++ Y +RS+  GI NSV
Sbjct: 48  SNAPRHSMALVLIDHKVYSVRSNLRGIHNSV 78


>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1981

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 114  TTKTNKFRLPLCGCQKQLEMP-NYGSGVPIDSNFNCGC 224
            +T TN   L LCGC   +E+P + GS   +     C C
Sbjct: 1887 STATNLQTLILCGCSSLVELPYSIGSANNLQKLHLCRC 1924


>At1g80310.1 68414.m09402 expressed protein
          Length = 464

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 345 FVRAPIPRVPSSVADVPNCVCQMPN 419
           F+RA IP++P SV +    VC++ N
Sbjct: 273 FLRAAIPQIPLSVLNSVIAVCKLSN 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,042
Number of Sequences: 28952
Number of extensions: 294025
Number of successful extensions: 825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)