Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d08
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   1.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   2.8  
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   6.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   8.6  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/52 (21%), Positives = 29/52 (55%)
 Frame = +1

Query: 433 VTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYENNI 588
           V+ +++ IN+ +   +L  P F +G   + +  ++ V  DE+  +  Y++++
Sbjct: 38  VSHIKNAINVSLPTALLRRPSFDIGKVFACIKCNVKVSLDEINAIFLYDSSM 89


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 317 SRQSVITT-KYSSTSPLAETTPSTSPSQTLRMLRVSIMTWLPL 442
           SR +  T+  YS+T P    TPST+ S TL     S    +PL
Sbjct: 336 SRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSIPL 378


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 80  HFPSDIGIIDKRLNILHTNYNIE 12
           H P DIG+   +LN L+  YN +
Sbjct: 100 HLPCDIGLELDKLNKLYPKYNFQ 122


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 347 SSTSPLAETTPSTSPSQTLRMLRVSIMTWLPLSET 451
           +ST+P+  T P TS S  L     +  T +P + T
Sbjct: 404 NSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTST 438


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 412 KSEHYDMVTAVRDNINLQIEDHILEVPEFVLGGPVS 519
           +S+H ++  ++  + N   ++ IL VP+ +L    S
Sbjct: 180 QSQHVELTRSIARSFNSSYKEKILTVPDIILNSSSS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,015
Number of Sequences: 5004
Number of extensions: 50864
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)