Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d08
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     29   2.2  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    29   3.8  
12_02_0657 - 21605598-21606199,21606524-21606641                       28   5.0  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    28   5.0  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    28   5.0  
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901...    27   8.7  

>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 107 NLNYGRFGLHFPSDIGIIDKRLNILHTNYNIEG 9
           NL+  + G H PS+IG + K + +  +N NI G
Sbjct: 180 NLSSNQLGGHIPSEIGFLSKLIRLDLSNNNIIG 212


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 172 ECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPLSS-LDVSSKC 330
           E +A+  K +++  +VH  +EH+K K   + Q   D       LSS ++   KC
Sbjct: 344 EIMALDTKIIEWDGKVHEMEEHVKAKEKKKDQIVADENQKLAALSSEVEWKLKC 397


>12_02_0657 - 21605598-21606199,21606524-21606641
          Length = 239

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 484 EVPEFVLGGPVSDVMSHIVVGT-DELTTVDEYENNIKTDGI 603
           ++  FVLGGP +D +SH  VG   ++  + EY  +   +G+
Sbjct: 188 DICSFVLGGPDADDLSHREVGVFYDVHRLGEYAESFVDEGL 228


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 269 SCDW-FSPLTFKCSCALCTCHLNFRNFLIIAKHSQQTS 159
           S  W F P T   +C LCT  LN   FL+I++ S  T+
Sbjct: 294 SASWNFPPFTLFLNC-LCTFILNMSVFLVISRTSALTA 330


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +1

Query: 121 NLMMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQP 300
           +L++  S+ ++   +C+  ++ +RK LKF  ++  A   L  +  ++ +E  D    P+ 
Sbjct: 553 SLLLNHSLDESPLCICFLDVSSLRKVLKFLQELMQA-SGLNDRNTDKDEEVADKDSFPKN 611

Query: 301 LSSLD 315
            S+L+
Sbjct: 612 RSNLE 616


>03_02_0511 +
           9016215-9016425,9017292-9017365,9018399-9018609,
           9019235-9019263,9019646-9020798,9021022-9021251
          Length = 635

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 308 HWMSRQSVITTKYSSTSPLAETTPSTSPSQTLR 406
           HW + +S   T YS  SP+ E    T+  +T R
Sbjct: 377 HWKTSRSACDTPYSRASPIPEQEVPTAQWKTSR 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,039
Number of Sequences: 37544
Number of extensions: 323418
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)