Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d08
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09) 32 0.41
SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07) 31 0.96
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 29 2.2
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015) 29 3.9
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05) 29 3.9
SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08) 28 6.7
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 6.7
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
Length = 820
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 427 DMVTAVRDNIN-LQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDE 573
DM+ V D IN ++D +L VP+ V+G + DV+ + G D++ T DE
Sbjct: 252 DMLLGVPDVINDAMMDDLLLGVPD-VVGDAMMDVILGVTDGVDDVMTDDE 300
>SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPL 364
D T+ RK W +P+ S +HH+ + TT+ TSPL
Sbjct: 155 DITTTRKCWTSPLQESVGHHHYQQVLDITTTRKCWTSPL 193
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPLAET 373
D T+ K W +P+ S +HH+ + TT+ TSPL E+
Sbjct: 129 DITTTSKCWTSPLPASVGHHHYQQVLDITTTRKCWTSPLQES 170
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPL 364
D T+ K W +P+ S +HH+ + TT TSPL
Sbjct: 51 DITTTSKCWTSPLQESVGHHHYKKVLDITTTSKCWTSPL 89
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPL 364
D T+ RK W +P+ S +HH+ + TT+ T PL
Sbjct: 181 DITTTRKCWTSPLPASVGHHHYKKVLDITTTRKCWTLPL 219
>SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07)
Length = 184
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 391 WRCTGCRLRQR*SRRIFCRNHTLTRHPVMIMAAGDRCD 278
W GCR+ R S + C LT V++ +GDR +
Sbjct: 8 WSRDGCRVSSRGSNDVICACDHLTNFAVLVDVSGDRTE 45
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 272 PWITPISRSHYHHWMSRQSV-ITTKYSSTSPLAETTPSTSPSQTL 403
PW P + SH H M + S + S T P+ T P +P ++
Sbjct: 443 PWSKPSASSHQQHHMPQPSDGVVEPISQTDPVTFTKPGPTPGTSM 487
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 424 YDMVTAVRDNINLQIEDHILEVPEFVLGGP 513
YD+V +V D + L + D ++ VP+FVL P
Sbjct: 947 YDLVMSVPDFV-LSVPDFVMSVPDFVLSVP 975
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 272 PWITPISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQ 397
P T S+ H+HH S ITT + A ++PSTS SQ
Sbjct: 673 PPSTSSSQRHHHHPYHYHSAITTIHIIILIRAPSSPSTSSSQ 714
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 281 TPISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQ 397
T S+ H+HH S ITT + A ++PSTS S+
Sbjct: 710 TSSSQLHHHHPYHYHSAITTIHIIILITAPSSPSTSSSE 748
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 317 SRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVSIMTWLP 439
S S TT S+T + +TP T + TLR S+MT P
Sbjct: 112 SAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVMTTTP 152
>SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)
Length = 401
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 305 HHWMSRQSVITTKYSSTSPLAETTPSTSPSQT 400
HH M Q + ++ ST P + TPS P T
Sbjct: 356 HHTMQYQQQMQPQFISTGPSSNMTPSVYPGNT 387
>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
Length = 422
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 332 ITTKYSSTSPL--AETTPSTSPSQTLRMLRVSIMTWLPLSET 451
+T+ +ST+P+ A T P T P QT +L PL+ T
Sbjct: 30 VTSSQASTTPIITAVTNPETQPRQTCAILPQKTQAQTPLTPT 71
>SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)
Length = 531
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 231 GAFEGQRTEPVTGNPGSHLSPAAIIITGC 317
G F G +T P G P SH+SP ++ + C
Sbjct: 374 GRFRG-KTFPSFGGPNSHVSPHSLRVRSC 401
>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 517 SDVMSHIVVGTDELTTVDEYENNIKTD 597
S V++ IV G+ L T+D+ NNIKTD
Sbjct: 188 SSVITSIVTGS--LDTLDDVNNNIKTD 212
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 326 SVITTKYSSTSPLAETTPSTSPSQTLRMLRVSI 424
S + Y+S SP+ TTPS S S T+ + S+
Sbjct: 1221 SATSPPYTSASPVPTTTPSASSSPTISPIGSSL 1253
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 284 PISRSHYHHWMSRQSVITTKYSSTSPLAETTP 379
P+ +H +H S+ S ++T +STS L+ T+P
Sbjct: 1063 PVGVAHPYHRGSQFSTVSTSAASTSGLSVTSP 1094
>SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 311 WMSRQSVITTKYS--STSPLAETTPSTSPSQ 397
W + Q V +T Y ++PLA+ PST PS+
Sbjct: 53 WCTVQDVASTPYRIVHSTPLADKLPSTQPSK 83
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 269 KPWITPISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQTL 403
+P T + SH+ + + + TT SST P TT +T+ ++L
Sbjct: 1665 EPSTTDATTSHHESLPAAEPLSTTDRSSTLPEPSTTDATTSHESL 1709
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,864,972
Number of Sequences: 59808
Number of extensions: 388027
Number of successful extensions: 1108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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