Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d08
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 RQSVITTKYSSTSPLAETTPSTS 388
           RQS++ T+YS+T   A T  + S
Sbjct: 914 RQSMMPTRYSTTKSSAVTATNAS 936


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 205 FKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPL-SSLDVSSKCD 333
           + + ++  Q H  +KGL  S   ++ T LPQ +  + + S++ D
Sbjct: 261 YNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTKETSTRTD 304


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 501 VGGTSVGCDVTYRC 542
           +GG S GC    RC
Sbjct: 139 IGGASRGCTAVLRC 152


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 501 VGGTSVGCDVTYRC 542
           +GG S GC    RC
Sbjct: 139 IGGASRGCTAVLRC 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 290 SRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQT 400
           + SH H   +  + ITT  ++T+    TT +T+   T
Sbjct: 644 THSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNT 680


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 513 WSPQHEFRNFQNMIFDLKIDIVSDSGNHVIMLTLNILRVCDGDV 382
           W   +    F+N++   KID   D+G++ I  +    R C G V
Sbjct: 384 WRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAFS----RGCSGFV 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,090
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)