Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d08
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein ...    31   0.78 
At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family prote...    30   1.4  
At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa...    28   5.5  
At4g21700.1 68417.m03142 hypothetical protein                          27   7.3  
At2g21990.1 68415.m02612 expressed protein contains Pfam profile...    27   9.6  

>At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501
          Length = 562

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 413 LTSSEFVMEMYWVSSPPKVKSKNILS*SHFDETSSDDN 300
           L+++EF + +   SSPP    KNI + ++   +SS DN
Sbjct: 40  LSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSSGDN 77


>At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile: PF00561 alpha/beta
           hydrolase fold
          Length = 466

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 299 HYHHWMSRQSVITTKYSSTSPLAETTPSTS-PSQTLRMLRVSIMTW 433
           H HH +     ++   S+TSP A+ TP T  P   L     S+ +W
Sbjct: 101 HIHHKVLDPHTLSDDVSNTSPHAQETPKTKFPMILLHGFGASVFSW 146


>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
           family protein contains Pfam profiles PF00702: haloacid
           dehalogenase-like hydrolase, PF02130: Uncharacterized
           protein family UPF0054
          Length = 584

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 421 HYDMVTAVRDNINLQIEDHILEV--PEFVLGGPVSDVMSHIVVGTDELTTVDEYENNIK 591
           ++   T  R N+ +Q +  +LE+  P    G  V  +++H+ V  DE+  + + EN+I+
Sbjct: 484 YWSEATGDRANV-VQAQSDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIE 541


>At4g21700.1 68417.m03142 hypothetical protein 
          Length = 962

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 105  IFYLIKFNDGRFGSRY*AARLLGVLSNYEKVPEIQMAGAQ 224
            +F  + F   RFG R    +       YEKV E+Q AG Q
Sbjct: 917  LFAFLIFLQQRFGGRCFIPKRFREYVGYEKVVELQQAGEQ 956


>At2g21990.1 68415.m02612 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 252

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 317 SRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVS 421
           S  S  T  YS+ SP A  +PS +P Q + +L  S
Sbjct: 7   SGASSSTDSYSTPSPSASPSPSPAPRQHVTLLEPS 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,665
Number of Sequences: 28952
Number of extensions: 264148
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)