Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d07
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 128 3e-30
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 35 0.070
07_01_0442 - 3348638-3349126,3349978-3350322 34 0.093
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 33 0.28
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 30 1.5
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 2.6
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 2.6
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 3.5
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 29 4.6
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 4.6
02_05_0891 - 32554355-32555305 29 4.6
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 28 6.1
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 28 6.1
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 28 6.1
05_03_0483 + 14585581-14587977 28 8.1
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 128 bits (310), Expect = 3e-30
Identities = 72/177 (40%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Frame = +2
Query: 176 GKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAK-GKTLKDEDTLNSLNIQD---- 340
G + G++ + ++++ I KK YP RQ L L + GK+ K ++ +
Sbjct: 39 GGLRSRGKAKVADLQDAIYAKTKK-YYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97
Query: 341 --GS-KLFLKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY----GTQTSSPEQVAT 499
GS + KDLGPQV + +F EY GPL +Y Y P Y G + P Q T
Sbjct: 98 GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHPVQ--T 155
Query: 500 VAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYT 670
A W HY KR+ ET F+HRFSH T P+ N+FRNCAYYW F Y+AY+ NHPLYT
Sbjct: 156 YAMYYWCFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYT 212
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 179 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 358
+I + E+S+ VK I+ + +++YP Q + + +GK LKD+ TL + + S L +
Sbjct: 14 EIEASPEASVAEVKRIIESTQGQNVYPADQQMLIH-QGKILKDDTTLEGNKVAENSFLVI 72
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 34.3 bits (75), Expect = 0.093
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 494 ATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAY 646
A V + + H+ KR+ E LFIH++S G+MPL + Y + + Y
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQYS-GSMPLNTAATISSSYLVITATMIY 147
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 179 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 358
+I V + +VK I+ + + +YP Q + + +GK LKD+ TL+ + + S L +
Sbjct: 14 QIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIH-QGKVLKDDTTLDENKVLENSFLVI 72
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 257 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFV 427
P+RQ K+ KG LKD+ ++L ++DG KL + + + A GP+FV
Sbjct: 39 PERQ--KIMVKGGILKDDADWSTLGVKDGQKLMMIGTADE-----IVKAPEKGPVFV 88
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 470 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 574
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 318 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 353
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 470 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 574
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 322 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 357
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 470 VYHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWIRL 336
V HIK TV P+ QRV H + K +E + KAW+ L
Sbjct: 264 VAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIE-DNAEIKAWLAL 307
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 650 HDKPHRGQTTNNMHSF*TSSSMASYHVKSDE 558
HDKP RG+TT+ S +S +S+H ++ E
Sbjct: 81 HDKPSRGETTSISWSGNSSYLASSFHPRATE 111
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +2
Query: 593 NLFRNCAYYWL-FALYVA 643
N++R+ YYWL FA+YVA
Sbjct: 438 NMYRDLGYYWLRFAIYVA 455
>02_05_0891 - 32554355-32555305
Length = 316
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 464 GTQTSSPEQVATVAAICWSAHYAKRLFETLFIHRFSHGTMP 586
G + SSP++ A WS R+ E L HR HG++P
Sbjct: 124 GPKVSSPKRQAFHRI--WSTEDEVRILEALAAHRREHGSLP 162
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +2
Query: 593 NLFRNCAYYWL-FALYVA 643
N++R+ YYWL FA+Y+A
Sbjct: 478 NMYRDLGYYWLRFAIYIA 495
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +2
Query: 134 MEIEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 313
+EI+I ++ S + V + +KEKI + + ++Q +L +G+ LKD++
Sbjct: 103 IEIKIKTLDSQTY--NLRVNKRVPVPLLKEKI--ATVTGILSEQQ--RLICRGRVLKDDE 156
Query: 314 TLNSLNIQDGSKLFL 358
L++ +++DG L L
Sbjct: 157 LLSAYHVEDGHTLHL 171
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 242 KKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 358
K+ + PD+Q +L GK LKD TL NIQ S L L
Sbjct: 424 KEGIPPDQQ--RLIFAGKQLKDGRTLADYNIQKESTLHL 460
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 674 EQCIGDGSHDKPHRGQTTNNMHSF*TSSSMASYHVK-SDE*TKFQTT 537
EQC+ D S D+P G N+ A + K S+E T +TT
Sbjct: 716 EQCVADRSIDRPEMGDVLRNLEVALKMQECAENNSKFSEETTSSKTT 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,903
Number of Sequences: 37544
Number of extensions: 356771
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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