Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d07
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.52 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 387 RQDT*GPRSFKKSLDPS*ILREFRVSSSFNVLPLASSLRA*RSGYRDFFTLCWIF 223
           RQ+T    S+  +  PS +LR    S+    L  ASSL+  R G   F    ++F
Sbjct: 4   RQETSNEDSYLSAGRPSNLLRTSFSSAKLEKLYRASSLQQRRGGLEYFLLSAFLF 58


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 183 ILPSGFALDTLRISISILC 127
           I P+G  L ++RIS+++ C
Sbjct: 142 IFPNGSVLYSIRISLTLSC 160


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 183 ILPSGFALDTLRISISILC 127
           I P+G  L ++RIS+++ C
Sbjct: 142 IFPNGSVLYSIRISLTLSC 160


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 467 YHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWI 342
           Y   S  +DT T + + + +  L  + +K +   + LK  WI
Sbjct: 129 YDYPSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWI 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,127
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)