Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d05
         (533 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1911|AAM68556.1|  143|Drosophila melanogaster CG30077-P...   162   3e-40
BT022317-1|AAY54733.1|  133|Drosophila melanogaster IP04570p pro...   146   1e-35
M21152-1|AAA28506.1|  483|Drosophila melanogaster elav protein.        31   0.99 
AY051822-1|AAK93246.1|  483|Drosophila melanogaster LD33076p pro...    31   0.99 
AL022139-2|CAB37430.1|  483|Drosophila melanogaster EG:65F1.2,FB...    31   0.99 
AL022139-1|CAA18091.1|  479|Drosophila melanogaster EG:65F1.2,FB...    31   0.99 
AE014298-54|AAX52472.1|  479|Drosophila melanogaster CG4262-PB, ...    31   0.99 
AE014298-53|AAF45517.2|  483|Drosophila melanogaster CG4262-PA, ...    31   0.99 
X14394-1|CAA32567.1|  362|Drosophila melanogaster sodium channel...    29   3.0  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    29   3.0  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    29   3.0  
AY119473-1|AAM50127.1|  796|Drosophila melanogaster GH05455p pro...    29   5.3  
AY071585-1|AAL49207.1|  486|Drosophila melanogaster RE64043p pro...    29   5.3  
AF273707-1|AAL35409.1|  879|Drosophila melanogaster PFTAIRE-inte...    29   5.3  
AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB...    29   5.3  
AE014297-816|AAO41518.1|  879|Drosophila melanogaster CG33719-PA...    29   5.3  
AE014296-1315|AAS65064.1|  486|Drosophila melanogaster CG32373-P...    29   5.3  
AE014296-1314|AAN12048.1|  486|Drosophila melanogaster CG32373-P...    29   5.3  
AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p pro...    28   7.0  
AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC ...    28   7.0  
U31368-1|AAA92297.1| 2527|Drosophila melanogaster transcription ...    28   9.2  
L42311-1|AAA98814.1| 2529|Drosophila melanogaster zinc finger pr...    28   9.2  
BT029081-1|ABJ17014.1|  339|Drosophila melanogaster IP10546p pro...    28   9.2  
AY051990-1|AAK93414.1|  776|Drosophila melanogaster LD45682p pro...    28   9.2  
AE014296-2710|AAF49482.1|  776|Drosophila melanogaster CG4925-PA...    28   9.2  
AE014296-2627|AAF49545.1|  339|Drosophila melanogaster CG13075-P...    28   9.2  
AE013599-1219|AAF58712.1| 2532|Drosophila melanogaster CG7734-PC...    28   9.2  
AE013599-1218|AAF58713.1| 2532|Drosophila melanogaster CG7734-PB...    28   9.2  
AE013599-1217|AAM68718.1| 2532|Drosophila melanogaster CG7734-PA...    28   9.2  
AE013599-1216|AAS64914.1| 2577|Drosophila melanogaster CG7734-PD...    28   9.2  

>AE013599-1911|AAM68556.1|  143|Drosophila melanogaster CG30077-PA
           protein.
          Length = 143

 Score =  162 bits (393), Expect = 3e-40
 Identities = 77/120 (64%), Positives = 95/120 (79%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           KEH  +QA ++  QE +RKE I A+N+LTQ+LVD LNVGVAQAYLNQK+LDAEAK LH G
Sbjct: 3   KEHHKEQAKRKQEQEVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLG 62

Query: 293 AINFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSS 472
           A NF+KQT QWL L++ FS+ALK++GDVENWARSIE DM  I  TLE AY+ ++   +SS
Sbjct: 63  ATNFAKQTHQWLQLIDQFSTALKDLGDVENWARSIEGDMHTINQTLELAYKASRATQTSS 122


>BT022317-1|AAY54733.1|  133|Drosophila melanogaster IP04570p
           protein.
          Length = 133

 Score =  146 bits (355), Expect = 1e-35
 Identities = 71/107 (66%), Positives = 85/107 (79%)
 Frame = +2

Query: 152 QEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLT 331
           QE +RKE I A+N+LTQ+LVD LNVGVAQAYLNQK+LDAEAK LH GA NF+KQT QWL 
Sbjct: 6   QEVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLGATNFAKQTHQWLQ 65

Query: 332 LVENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSS 472
           L++ FS+ALK+ GDV NWARSIE DM  I  TLE AY+ ++   +SS
Sbjct: 66  LIDQFSTALKDPGDVVNWARSIEGDMHTINQTLELAYKASRATQTSS 112


>M21152-1|AAA28506.1|  483|Drosophila melanogaster elav protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 53  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 112

Query: 293 AI 298
           A+
Sbjct: 113 AV 114


>AY051822-1|AAK93246.1|  483|Drosophila melanogaster LD33076p
           protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 53  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 112

Query: 293 AI 298
           A+
Sbjct: 113 AV 114


>AL022139-2|CAB37430.1|  483|Drosophila melanogaster
           EG:65F1.2,FBgn0000570;elav protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 53  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 112

Query: 293 AI 298
           A+
Sbjct: 113 AV 114


>AL022139-1|CAA18091.1|  479|Drosophila melanogaster
           EG:65F1.2,FBgn0000570;elav protein.
          Length = 479

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 49  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 108

Query: 293 AI 298
           A+
Sbjct: 109 AV 110


>AE014298-54|AAX52472.1|  479|Drosophila melanogaster CG4262-PB,
           isoform B protein.
          Length = 479

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 49  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 108

Query: 293 AI 298
           A+
Sbjct: 109 AV 110


>AE014298-53|AAF45517.2|  483|Drosophila melanogaster CG4262-PA,
           isoform A protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 113 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
           ++ Q +QA  +V Q+Q ++    AA  +TQ L       VAQ  + Q++    A ++ Q 
Sbjct: 53  QQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQA 112

Query: 293 AI 298
           A+
Sbjct: 113 AV 114


>X14394-1|CAA32567.1|  362|Drosophila melanogaster sodium channel
           protein protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 494 IQNNYFIDYCLVSLVLFHMLFL 429
           I  N F DYC+++ +LF+ +FL
Sbjct: 69  IATNQFFDYCVMATILFNCIFL 90


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
           isoform A protein.
          Length = 1618

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 494 IQNNYFIDYCLVSLVLFHMLFL 429
           I  N F DYC+++ +LF+ +FL
Sbjct: 122 IATNQFFDYCVMATILFNCIFL 143


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
           isoform B protein.
          Length = 2327

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 494 IQNNYFIDYCLVSLVLFHMLFL 429
           I  N F DYC+++ +LF+ +FL
Sbjct: 122 IATNQFFDYCVMATILFNCIFL 143


>AY119473-1|AAM50127.1|  796|Drosophila melanogaster GH05455p
           protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 197 TQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDV 376
           TQAL+D L          + +L  E   L     N  K    +L +        +E+G +
Sbjct: 191 TQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKD---YLHIEVTNGELKEEVGTL 247

Query: 377 ENWARSIENDMKIITDTLERA 439
           EN  R +EN M+   D+ ERA
Sbjct: 248 ENKIRQMENQMR---DSEERA 265


>AY071585-1|AAL49207.1|  486|Drosophila melanogaster RE64043p
           protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 265 CGSKTFTPRCNKFFQTNTAMVDSCGKFQQCSQRNWGCRKL 384
           C   T    C + +  N+  + SC    +C + N GC ++
Sbjct: 135 CNRSTHKCECYEGYTLNSTDLRSCNDIDECKESNGGCSQV 174


>AF273707-1|AAL35409.1|  879|Drosophila melanogaster
           PFTAIRE-interacting factor 1A protein.
          Length = 879

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 197 TQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDV 376
           TQAL+D L          + +L  E   L     N  K    +L +        +E+G +
Sbjct: 703 TQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKD---YLHIEVTNGELKEEVGTL 759

Query: 377 ENWARSIENDMKIITDTLERA 439
           EN  R +EN M+   D+ ERA
Sbjct: 760 ENKIRQMENQMR---DSEERA 777


>AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB,
           isoform B protein.
          Length = 1308

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 197 TQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDV 376
           TQAL+D L          + +L  E   L     N  K    +L +        +E+G +
Sbjct: 703 TQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKD---YLHIEVTNGELKEEVGTL 759

Query: 377 ENWARSIENDMKIITDTLERA 439
           EN  R +EN M+   D+ ERA
Sbjct: 760 ENKIRQMENQMR---DSEERA 777


>AE014297-816|AAO41518.1|  879|Drosophila melanogaster CG33719-PA,
           isoform A protein.
          Length = 879

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +2

Query: 197 TQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDV 376
           TQAL+D L          + +L  E   L     N  K    +L +        +E+G +
Sbjct: 703 TQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKD---YLHIEVTNGELKEEVGTL 759

Query: 377 ENWARSIENDMKIITDTLERA 439
           EN  R +EN M+   D+ ERA
Sbjct: 760 ENKIRQMENQMR---DSEERA 777


>AE014296-1315|AAS65064.1|  486|Drosophila melanogaster CG32373-PB,
           isoform B protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 265 CGSKTFTPRCNKFFQTNTAMVDSCGKFQQCSQRNWGCRKL 384
           C   T    C + +  N+  + SC    +C + N GC ++
Sbjct: 135 CNRSTHKCECYEGYTLNSTDLRSCNDIDECKESNGGCSQV 174


>AE014296-1314|AAN12048.1|  486|Drosophila melanogaster CG32373-PA,
           isoform A protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 265 CGSKTFTPRCNKFFQTNTAMVDSCGKFQQCSQRNWGCRKL 384
           C   T    C + +  N+  + SC    +C + N GC ++
Sbjct: 135 CNRSTHKCECYEGYTLNSTDLRSCNDIDECKESNGGCSQV 174


>AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p protein.
          Length = 1775

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = +2

Query: 113  KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
            K+   +Q A+ +          +AAN+  Q  V+HL+  +AQ  L     + +   L   
Sbjct: 912  KQEIQEQTAQTIDWGVDEDPWASAANEAPQTDVEHLHTRIAQLELQLSNAEQQKTELQTK 971

Query: 293  AINFSKQTQQWLTLVENFSSALKEI-GDVENW-ARSIENDMKIITDTLERAYEKAQE 457
            A    K+ +++ T     ++    +  D+++     +++ +++    L +A E +Q+
Sbjct: 972  AAKLMKRLKEYKTKATTTATPTVTVDNDLDSTIIEELKHQLQLQESRLSKAEEISQQ 1028


>AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC
            protein.
          Length = 2779

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = +2

Query: 113  KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 292
            K+   +Q A+ +          +AAN+  Q  V+HL+  +AQ  L     + +   L   
Sbjct: 1916 KQEIQEQTAQTIDWGVDEDPWASAANEAPQTDVEHLHTRIAQLELQLSNAEQQKTELQTK 1975

Query: 293  AINFSKQTQQWLTLVENFSSALKEI-GDVENW-ARSIENDMKIITDTLERAYEKAQE 457
            A    K+ +++ T     ++    +  D+++     +++ +++    L +A E +Q+
Sbjct: 1976 AAKLMKRLKEYKTKATTTATPTVTVDNDLDSTIIEELKHQLQLQESRLSKAEEISQQ 2032


>U31368-1|AAA92297.1| 2527|Drosophila melanogaster transcription
            factor protein.
          Length = 2527

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2298 HLQKHERSEAHKNKVMMTSTF 2318


>L42311-1|AAA98814.1| 2529|Drosophila melanogaster zinc finger protein
            protein.
          Length = 2529

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2300 HLQKHERSEAHKNKVMMTSTF 2320


>BT029081-1|ABJ17014.1|  339|Drosophila melanogaster IP10546p
           protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 208 GRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSCGKFQQC 354
           G   +C  CSS     K  C S T   RC+      T+ V +CG  + C
Sbjct: 87  GNGAQCEVCSS---GAKYACVSSTQYARCSSAGDVLTSSVYNCGTDEIC 132


>AY051990-1|AAK93414.1|  776|Drosophila melanogaster LD45682p
           protein.
          Length = 776

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 161 KRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQ 322
           KR+E +T   ++++ +V   N  +  A    + LDAE KLL Q  + +  +  Q
Sbjct: 433 KRQELLTINKEMSELIVQLQN-DICLAKAKAQGLDAENKLLKQEKLTYDTKYNQ 485


>AE014296-2710|AAF49482.1|  776|Drosophila melanogaster CG4925-PA
           protein.
          Length = 776

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 161 KRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQ 322
           KR+E +T   ++++ +V   N  +  A    + LDAE KLL Q  + +  +  Q
Sbjct: 433 KRQELLTINKEMSELIVQLQN-DICLAKAKAQGLDAENKLLKQEKLTYDTKYNQ 485


>AE014296-2627|AAF49545.1|  339|Drosophila melanogaster CG13075-PA
           protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 208 GRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSCGKFQQC 354
           G   +C  CSS     K  C S T   RC+      T+ V +CG  + C
Sbjct: 87  GNGAQCEVCSS---GAKYACVSSTQYARCSSAGDVLTSSVYNCGTDEIC 132


>AE013599-1219|AAF58712.1| 2532|Drosophila melanogaster CG7734-PC,
            isoform C protein.
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2303 HLQKHERSEAHKNKVMMTSTF 2323


>AE013599-1218|AAF58713.1| 2532|Drosophila melanogaster CG7734-PB,
            isoform B protein.
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2303 HLQKHERSEAHKNKVMMTSTF 2323


>AE013599-1217|AAM68718.1| 2532|Drosophila melanogaster CG7734-PA,
            isoform A protein.
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2303 HLQKHERSEAHKNKVMMTSTF 2323


>AE013599-1216|AAS64914.1| 2577|Drosophila melanogaster CG7734-PD,
            isoform D protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 438  HMKKHKRNQAVVNKVIVLDTF 500
            H++KH+R++A  NKV++  TF
Sbjct: 2348 HLQKHERSEAHKNKVMMTSTF 2368


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,742
Number of Sequences: 53049
Number of extensions: 358471
Number of successful extensions: 1277
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)