Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d04
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 72 5e-14
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 56 3e-09
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 30 0.20
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 28 1.1
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 28 1.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 4.3
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 10.0
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 72.1 bits (169), Expect = 5e-14
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Frame = +1
Query: 202 FARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN-EFRQLGQLYCEVKFAPFSCPRK 378
+ + ++A GS+Y E K K+ C+V PR P + FR +L CE + +PFS
Sbjct: 39 YLKLGWATKAVGSSYFESEKIKIACTVSGPR--PSKTFAFRSSAKLNCEFRLSPFSTS-V 95
Query: 379 RRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 519
R+ +V VEEK+ S + A+ P++ H +P IDV I ++E DG+
Sbjct: 96 RQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGA 142
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 56.4 bits (130), Expect = 3e-09
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +1
Query: 148 GKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR-Q 324
G R DGR +E R+ F R + GSA++EL TKV+C V P E +++ R
Sbjct: 11 GLRNDGRRWDEMRN---FQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARAD 67
Query: 325 LGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYIL 504
+ E+ A FS ++ + D + +AL+ E + +P QI V +++L
Sbjct: 68 RTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127
Query: 505 EHDGS 519
+ DG+
Sbjct: 128 QDDGA 132
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 166 RELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCE 345
R ++ S +F R D+ + GS +E + F P + NEF+ + +L+C
Sbjct: 382 RFISVKNSSDLFLVRCDLYNVDHGSLKIEESRLG-----FPPPVVRMSNEFKDIAELFCR 436
Query: 346 VKFAP 360
+ + P
Sbjct: 437 IPYMP 441
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 83 LYDTLSSGPLNLRKSSGMIIYLF 15
++ T S GPLNL + G++++LF
Sbjct: 84 IFPTSSMGPLNLVSNLGLVLFLF 106
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 520 MTRHVLRCILKHQSDSLGRSAYRQPVQEPAVKQQTRLSLLHQEH 389
+ +HV+RC L+ + R A R + EP ++ T +L +H
Sbjct: 220 LLKHVIRCYLRLSDNPRAREALRHCLPEP-LRDATFAQVLKDDH 262
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 301 PHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCR 459
P QN R+L L + F + PD E++A +L++ L+P + R
Sbjct: 539 PLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYILR 591
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -1
Query: 253 TPHMLNPLLVKPCQFWQKTYTCCELHLAHVHLFFSRFHHTDLLIVRRMFSSSL*YIFYMI 74
TP + PL+ PC + Y C + + FF T L+ M ++F++
Sbjct: 156 TPWYMIPLIWVPCVTYGFLYACTGIPFSVAITFFIIGLFTWTLVEYTMHR----FLFHLD 211
Query: 73 HYLLDH*IF 47
Y DH IF
Sbjct: 212 EYTPDHPIF 220
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 67 DSVSYKIYTKDYLKTYDEQLKDLYDEN 147
DSV Y I K Y+K Q K YD N
Sbjct: 920 DSVGYNIEVKRYVKKVSGQGKMRYDYN 946
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 244 YVELRKTKVVCSVFDPREIPHQ 309
Y +K KV+ VFDPR+ H+
Sbjct: 64 YKNSQKEKVINPVFDPRKPAHE 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,670
Number of Sequences: 5004
Number of extensions: 42592
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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