Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d04
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 79 2e-15
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 79 2e-15
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 47 9e-06
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 30 1.4
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 30 1.4
08_02_0613 - 19330124-19331587 28 4.4
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 27 7.7
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 79.4 bits (187), Expect = 2e-15
Identities = 47/127 (37%), Positives = 64/127 (50%)
Frame = +1
Query: 139 DENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 318
D + R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE +
Sbjct: 36 DADWPRADGRSFHDCRPA---FMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLY 92
Query: 319 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 498
G+L C V + F+ P + + ++ K S L +ALE AV H FP +DV
Sbjct: 93 SDTGRLNCNVSYTTFATPIRGQ----GMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFAL 148
Query: 499 ILEHDGS 519
+LE GS
Sbjct: 149 VLESGGS 155
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/127 (37%), Positives = 63/127 (49%)
Frame = +1
Query: 139 DENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 318
D + R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE +
Sbjct: 34 DADWPRADGRSFHDCRPA---FMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLY 90
Query: 319 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 498
G+L C V + F+ P + + + K S L +ALE AV H FP +DV
Sbjct: 91 SDTGRLNCNVSYTTFATPIRGQ----GTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFAL 146
Query: 499 ILEHDGS 519
+LE GS
Sbjct: 147 VLESGGS 153
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 340 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG 516
CE + A FS +RR D +S+ +RQ +E ++ H P QID+ + +L+ DG
Sbjct: 112 CEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADG 170
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 29.9 bits (64), Expect = 1.4
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 142 ENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTK--VVCSVFD---PREIPH 306
E GKR DGR E R + ++ ++ +A GSA +T+ V ++ D + I +
Sbjct: 407 EGGKRSDGRSPCELRPI---NSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDN 463
Query: 307 QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPNYQI 483
+ + Y + F P S R P+ E + +ALEP + FP Y I
Sbjct: 464 LVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFP-YTI 522
Query: 484 DVLIYILEHDGS 519
V I E +GS
Sbjct: 523 RVESTITESNGS 534
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 29.9 bits (64), Expect = 1.4
Identities = 29/122 (23%), Positives = 53/122 (43%)
Frame = +1
Query: 154 RKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ 333
R DGR N+ R F + + +A GSA T V+ +V+ P+ + E +
Sbjct: 5 RADGRNPNQLRP---FSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKAS 61
Query: 334 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 513
+ EV + P + + +EK + L++ L+ PN V++ ++ +D
Sbjct: 62 I--EVVWKPMTGQIGK-------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGND 112
Query: 514 GS 519
GS
Sbjct: 113 GS 114
>08_02_0613 - 19330124-19331587
Length = 487
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 67 DSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDG-RELNEARSMCMFF 204
D YK++ DYL++ D + +L++ N + D R+L E + F
Sbjct: 427 DDSGYKLWRYDYLESGDNRRVELWNLNNPKDDNLRDLYERNQVSYVF 473
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 43 FRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDGRELN 177
FR SV+Y + L+ Y+E+++DL DE+ + + GR+L+
Sbjct: 303 FRLSEERSSSVAYT-FAVSILEVYNEKIRDLLDESSE-QTGRKLD 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,505
Number of Sequences: 37544
Number of extensions: 250736
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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