Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d04
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)          71   9e-13
SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)                   31   0.64 
SB_47077| Best HMM Match : Kinesin (HMM E-Value=1.7e-27)               31   0.84 
SB_49344| Best HMM Match : DUF1366 (HMM E-Value=6.8)                   30   1.1  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)          29   2.6  
SB_21808| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.067)             28   4.5  
SB_34270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     28   5.9  
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               28   5.9  
SB_7453| Best HMM Match : Microcin (HMM E-Value=2)                     28   5.9  
SB_4208| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69)                27   7.9  
SB_55| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.3)               27   7.9  

>SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)
          Length = 247

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
 Frame = +1

Query: 130 DLYDENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 309
           ++    G R DGR+ +E R M     +  ++SQA GSAY+E+  TK + +V+ P E+  Q
Sbjct: 5   EVLSPEGLRIDGRKASELRKMV---CKVGVLSQADGSAYIEMGNTKALATVYGPHEV--Q 59

Query: 310 NEFRQL-GQLYCEVKF--APFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQ 480
           N+ + L  ++   V+F  A FS   +++    D +   LS+ +R+  E A+  + +P  Q
Sbjct: 60  NKAKALHDRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQ 119

Query: 481 IDVLIYILEHDG 516
           ID+ + +L+ DG
Sbjct: 120 IDIYVQVLQADG 131


>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = +1

Query: 31  MPLDFRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDGRELNEARSMCMFFAR 210
           MP D +R NGPE  V+  +  K      D  ++    ++G R+DGR  +E R M +  A 
Sbjct: 1   MPFDSKRINGPE--VTQPVVYKSKSNNNDPLIR----KDGCRQDGRRPDELRPMSL-SAG 53

Query: 211 TDMVSQAKGSAYVELRKTKVVCSV 282
               S A   A +E+      C++
Sbjct: 54  IICASVALAMAGIEMLDLVSACTM 77


>SB_47077| Best HMM Match : Kinesin (HMM E-Value=1.7e-27)
          Length = 212

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +1

Query: 43  FRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENG----KRKDGRELNEA 183
           F + +   D ++YK+ T  YL+ Y+E ++DL + +      R+DG+ +N A
Sbjct: 120 FSQMDETNDDMAYKV-TMSYLEIYNEMIRDLLNPSSGYLELREDGKGVNVA 169


>SB_49344| Best HMM Match : DUF1366 (HMM E-Value=6.8)
          Length = 203

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 67  DSVSYKIYTKDYLKTYDEQLKDLYDENGKRKD 162
           DS+ Y+I TKD+ K   + +K ++D +   KD
Sbjct: 35  DSLMYEIETKDFYKDIGKDVKSMFDTSNYPKD 66


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 67   DSVSYKIYTKDYLKTYDEQLKDLYDENGKRKD 162
            DS+ Y+I TKD+ K   + +K ++D +   KD
Sbjct: 997  DSLMYEIETKDFYKDIGKDVKSMFDTSNYPKD 1028


>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
          Length = 737

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +1

Query: 25  IIMPLDFRRFNGPEDSVSY-KIYTKDYLKTYDEQLK---DLYDENGKRKDGRELNEARSM 192
           I++PL F R       +   K+Y K Y   Y +  +   DL+ E  K  DG+ ++ ++ M
Sbjct: 267 ILLPLSFFRGLIKNSEIELNKLYIKTYGVFYQKNAQVFVDLFQELNKYYDGKNMDLSQVM 326

Query: 193 CMFFA 207
             FFA
Sbjct: 327 NNFFA 331


>SB_21808| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.067)
          Length = 1014

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 67  DSVSYKIYTKDYLKTYDEQLKDLYDENGKRKD 162
           DS+ Y+I TKD+ K     ++ ++D +   KD
Sbjct: 846 DSLMYEIETKDFYKDISGDVRSMFDTSNYPKD 877


>SB_34270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 76  SYKIYTKDYLKTYDEQLKDLYDENGKRK 159
           +YK   ++ L  Y++ LKDL++ N +R+
Sbjct: 27  AYKAKAENKLPVYEQALKDLWNNNNQRR 54


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 103 LKTYDEQLKDLYDENGKRKDGRELNEARSMCMFFARTDMV 222
           L +YDEQL++  D N    D  +L E  + C F A T  +
Sbjct: 195 LSSYDEQLEEEEDTNA-MLDSLDLFEEITHCEFLANTQFI 233


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 76  SYKIYTKDYLKTYDEQLKDLYDENGKRK 159
           +YK   ++ L  Y++ LKDL++ N +R+
Sbjct: 229 AYKAKAENKLPVYEQALKDLWNNNNQRR 256


>SB_7453| Best HMM Match : Microcin (HMM E-Value=2)
          Length = 158

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 67  DSVSYKIYTKDYLKTYDEQLKDLYDENGKRKD 162
           DS+ Y+I T+D+       +K ++D N   KD
Sbjct: 50  DSLMYEIETRDFYGDISPDVKSMFDTNNYPKD 81


>SB_4208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 125 NCSSYVFK*SLVYIL--YDTLSSGPLNLRKSSGMIIYLFDT 9
           +C+ Y FK S   IL  YDT    P   + SS  I++ +DT
Sbjct: 14  DCAPYPFKGSSNTILFPYDTYDCVPYPFKGSSNTILFPYDT 54



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 125 NCSSYVFK*SLVYIL--YDTLSSGPLNLRKSSGMIIYLFDT 9
           +C  Y FK S   IL  YDT    P   + SS  I++ +DT
Sbjct: 35  DCVPYPFKGSSNTILFPYDTYDCAPYPFKGSSNTILFPYDT 75


>SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
          Length = 296

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 125 NCSSYVFK*SLVYIL--YDTLSSGPLNLRKSSGMIIYLFDT 9
           +C+ Y FK S   IL  YDT    P   + SS  I++ +DT
Sbjct: 161 DCAPYPFKGSSNTILFPYDTYDCVPTPFKGSSNTILFPYDT 201


>SB_55| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.3)
          Length = 459

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 421 QTRLSLLHQEHMVDVSSGM-KTVQISLHNITGQADGIH 311
           +++++ LHQ  + D+ S + K  Q S HNI  + +G+H
Sbjct: 55  RSKVNKLHQYSIHDIRSKVNKLHQYSSHNIRSKVNGLH 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,586
Number of Sequences: 59808
Number of extensions: 309447
Number of successful extensions: 831
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)