Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d04
         (559 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052252-1|AAH52252.1|  272|Homo sapiens exosome component 6 pro...    74   4e-13
BC002777-1|AAH02777.1|  245|Homo sapiens exosome component 4 pro...    69   8e-12
AK000598-1|BAA91279.1|  245|Homo sapiens protein ( Homo sapiens ...    69   8e-12
AF281133-1|AAF82134.1|  245|Homo sapiens exosome component Rrp41...    69   8e-12
BC020773-1|AAH20773.1|  276|Homo sapiens exosome component 8 pro...    34   0.29 
AL138706-8|CAI14013.1|  275|Homo sapiens RP11-421P11.3 protein.        34   0.29 
AF025438-1|AAC39558.1|  265|Homo sapiens Opa-interacting protein...    34   0.29 
BC053660-1|AAH53660.1|  783|Homo sapiens polyribonucleotide nucl...    31   3.6  
AY027528-1|AAK13047.1|  783|Homo sapiens 3'-5' RNA exonuclease p...    31   3.6  
AK027437-1|BAB55109.1|  504|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AJ458465-1|CAD30289.1|  783|Homo sapiens polynucleotide phosphor...    31   3.6  
AC015982-3|AAY24271.1|  783|Homo sapiens unknown protein.              31   3.6  

>BC052252-1|AAH52252.1|  272|Homo sapiens exosome component 6
           protein.
          Length = 272

 Score = 73.7 bits (173), Expect = 4e-13
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
 Frame = +1

Query: 31  MPLDFRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDGRELNEARSMCMFFAR 210
           MP D RR  GPE+S   ++Y  D     +E+     D    R               +AR
Sbjct: 1   MPGDHRRIRGPEESQPPQLYAAD-----EEEAPGTRDPTRLRP-------------VYAR 42

Query: 211 TDMVSQAKGSAYVELRKTKVVCSVFDPREIPH------------QNEFRQLGQLYCEVKF 354
             ++SQAKGSAY+E   TKV+C+V  PR+               +      G+L C+ + 
Sbjct: 43  AGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRR 102

Query: 355 APFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 519
           APF+  R+R P     EE+ L++AL++ALEPAV    +P  Q++V   +LE  GS
Sbjct: 103 APFAGRRRRAP-PGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGS 156


>BC002777-1|AAH02777.1|  245|Homo sapiens exosome component 4
           protein.
          Length = 245

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
 Frame = +1

Query: 130 DLYDENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--P 303
           +L  + G R DGR   E R +    AR  + +QA GSAY+E   TK +  V+ P EI   
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQ---ARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61

Query: 304 HQNEFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQ 480
                     + C+   A FS   RKRRP+  D +   + + LRQ  E A+     P  Q
Sbjct: 62  RARALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQ 120

Query: 481 IDVLIYILEHDG 516
           ID+ + +L+ DG
Sbjct: 121 IDIYVQVLQADG 132


>AK000598-1|BAA91279.1|  245|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20591 fis, clone KAT09018. ).
          Length = 245

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
 Frame = +1

Query: 130 DLYDENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--P 303
           +L  + G R DGR   E R +    AR  + +QA GSAY+E   TK +  V+ P EI   
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQ---ARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61

Query: 304 HQNEFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQ 480
                     + C+   A FS   RKRRP+  D +   + + LRQ  E A+     P  Q
Sbjct: 62  RARALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQ 120

Query: 481 IDVLIYILEHDG 516
           ID+ + +L+ DG
Sbjct: 121 IDIYVQVLQADG 132


>AF281133-1|AAF82134.1|  245|Homo sapiens exosome component Rrp41
           protein.
          Length = 245

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
 Frame = +1

Query: 130 DLYDENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--P 303
           +L  + G R DGR   E R +    AR  + +QA GSAY+E   TK +  V+ P EI   
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQ---ARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61

Query: 304 HQNEFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQ 480
                     + C+   A FS   RKRRP+  D +   + + LRQ  E A+     P  Q
Sbjct: 62  RARALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQ 120

Query: 481 IDVLIYILEHDG 516
           ID+ + +L+ DG
Sbjct: 121 IDIYVQVLQADG 132


>BC020773-1|AAH20773.1|  276|Homo sapiens exosome component 8
           protein.
          Length = 276

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 29/97 (29%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 RKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ 333
           R DGREL E R+  +       +S A GSA V+L  T V+C V      P   +    G 
Sbjct: 23  RPDGRELGEFRTTTV---NIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGY 78

Query: 334 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 444
           +   V   P  C  + R   P  E +  S  +   +E
Sbjct: 79  VVPNVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114


>AL138706-8|CAI14013.1|  275|Homo sapiens RP11-421P11.3 protein.
          Length = 275

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 29/97 (29%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 RKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ 333
           R DGREL E R+  +       +S A GSA V+L  T V+C V      P   +    G 
Sbjct: 23  RPDGRELGEFRTTTV---NIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGY 78

Query: 334 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 444
           +   V   P  C  + R   P  E +  S  +   +E
Sbjct: 79  VVPNVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114


>AF025438-1|AAC39558.1|  265|Homo sapiens Opa-interacting protein
           OIP2 protein.
          Length = 265

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 29/97 (29%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 RKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ 333
           R DGREL E R+  +       +S A GSA V+L  T V+C V      P   +    G 
Sbjct: 21  RPDGRELGEFRTTTV---NIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGY 76

Query: 334 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 444
           +   V   P  C  + R   P  E +  S  +   +E
Sbjct: 77  VVPNVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 112


>BC053660-1|AAH53660.1|  783|Homo sapiens polyribonucleotide
           nucleotidyltransferase 1 protein.
          Length = 783

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 KRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 297
           KR DGR+L   R++       DM     GSA  +  +T+V+C+V FD  E
Sbjct: 357 KRCDGRDLTSLRNVS---CEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403


>AY027528-1|AAK13047.1|  783|Homo sapiens 3'-5' RNA exonuclease
           protein.
          Length = 783

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 KRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 297
           KR DGR+L   R++       DM     GSA  +  +T+V+C+V FD  E
Sbjct: 357 KRCDGRDLTSLRNVS---CEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403


>AK027437-1|BAB55109.1|  504|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
           ).
          Length = 504

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 KRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 297
           KR DGR+L   R++       DM     GSA  +  +T+V+C+V FD  E
Sbjct: 357 KRCDGRDLTSLRNVS---CEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403


>AJ458465-1|CAD30289.1|  783|Homo sapiens polynucleotide
           phosphorylase-like protein protein.
          Length = 783

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 KRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 297
           KR DGR+L   R++       DM     GSA  +  +T+V+C+V FD  E
Sbjct: 357 KRCDGRDLTSLRNVS---CEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403


>AC015982-3|AAY24271.1|  783|Homo sapiens unknown protein.
          Length = 783

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 KRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 297
           KR DGR+L   R++       DM     GSA  +  +T+V+C+V FD  E
Sbjct: 357 KRCDGRDLTSLRNVS---CEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,178,708
Number of Sequences: 237096
Number of extensions: 1419241
Number of successful extensions: 2906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2900
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)