Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d04
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...    59   2e-09
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.1  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    27   9.1  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    27   9.1  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 35/130 (26%), Positives = 60/130 (46%)
 Frame = +1

Query: 130 DLYDENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 309
           ++  E+G R DGR   + R++     R  +   A+GS Y+E   TKV+C+V+ P E    
Sbjct: 2   NIISEHGFRIDGRRPAQIRNIN---TRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSS 58

Query: 310 NEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 489
                   + C+     FS   ++     D +   +S  L +A E  +    FP  Q+D+
Sbjct: 59  KRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDI 118

Query: 490 LIYILEHDGS 519
              +++ DGS
Sbjct: 119 FCEVIQGDGS 128


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = -3

Query: 302 GISLGSNTEHTTLVFLNSTYAEPFACETMS--VLAKNIHML 186
           GI+LGSN +  +++ +N+ +  PF  +T++  ++ +++H L
Sbjct: 286 GINLGSNGKPHSILAMNNDFNYPFPVDTVNSQLIFQHLHPL 326


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 67  DSVSYKIYTKDY---LKTYDEQLKDLYDENGKRKDGRELNEARSMCM 198
           +S  YK   K Y   +K Y+   KDL D   +R   R   EAR+M M
Sbjct: 360 NSEEYKNLKKYYSLAIKEYERVSKDLEDITTERDAFRSAKEARAMLM 406


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 67  DSVSYKIYTKDY---LKTYDEQLKDLYDENGKRKDGRELNEARSMCM 198
           +S  YK   K Y   +K Y+   KDL D   +R   R   EAR+M M
Sbjct: 360 NSEEYKNLKKYYSLAIKEYERVSKDLEDITTERDAFRSAKEARAMLM 406


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 268 VVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 360
           +   + DP+      E R LGQ Y ++KF P
Sbjct: 481 ITARLMDPKGHTDDIEMRDLGQQYYQLKFTP 511


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 268 VVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 360
           +   + DP+      E R LGQ Y ++KF P
Sbjct: 430 ITARLMDPKGHTDDIEMRDLGQQYYQLKFTP 460


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 268 VVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 360
           +   + DP+      E R LGQ Y ++KF P
Sbjct: 428 ITARLMDPKGHTDDIEMRDLGQQYYQLKFTP 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,795
Number of Sequences: 27780
Number of extensions: 238588
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)