Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d04
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 196 YTCCELHLAHVHLFFSRFHHTDLLIVRRMFSSSL 95
           YT C + LA V L+F   ++  L I     + SL
Sbjct: 855 YTTCVIWLAFVPLYFGTGNNVALRITSMSVTISL 888


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 146 TGKEKMDVS*MKLAACVCFLPELTW 220
           T  +  ++   K A  +CFL  L+W
Sbjct: 263 TSSQSAEIRIAKAAITICFLYVLSW 287


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 464 KCLQTAGSRACRK 426
           KCL T+GS  C K
Sbjct: 113 KCLPTSGSDNCNK 125


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 464 KCLQTAGSRACRK 426
           KCL T+GS  C K
Sbjct: 113 KCLPTSGSDNCNK 125


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 333 LAKLTEFILMWYLP 292
           + KL   I+MWY P
Sbjct: 275 IMKLVGIIIMWYSP 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,901
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)