Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d04
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to ...    77   1e-14
At4g27490.1 68417.m03949 3' exoribonuclease family domain 1-cont...    72   2e-13
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara...    34   0.074
At3g46210.1 68416.m05002 3' exoribonuclease family domain 1-cont...    30   1.2  
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera...    30   1.2  
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse...    28   4.9  
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati...    27   8.5  

>At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to
           exonuclease RRP41 [Arabidopsis thaliana] GI:6164938
          Length = 241

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
 Frame = +1

Query: 148 GKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQL 327
           G R DGR  NE R +    A   +VS+A GSA  E+  TKV+ +V+ PREI ++++ ++ 
Sbjct: 8   GLRLDGRRFNEMRQIV---AEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKN 64

Query: 328 GQ--LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYI 501
               + CE   A FS   +RR    D     LS+ +RQ +E  +     P+ QID+ + +
Sbjct: 65  DHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 502 LEHDG 516
           L+ DG
Sbjct: 124 LQADG 128


>At4g27490.1 68417.m03949 3' exoribonuclease family domain
           1-containing protein contains Pfam PF01138: 3'
           exoribonuclease family, domain 1
          Length = 256

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 44/127 (34%), Positives = 61/127 (48%)
 Frame = +1

Query: 139 DENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 318
           D +  R DGR  ++ R   +   +T  VS A GSAY E   TKV+ SVF PRE      +
Sbjct: 29  DLDWSRPDGRGFHQCRPALL---QTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVY 85

Query: 319 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 498
             +G+L C V +  F+ P   +      + K  S  L +ALE  +    FP   +DV   
Sbjct: 86  SDVGRLNCNVSYTNFASPTLGQ----GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFAL 141

Query: 499 ILEHDGS 519
           +LE  GS
Sbjct: 142 VLESGGS 148


>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
           [Arabidopsis thaliana] GI:4894914; contains Pfam profile
           PF02416: mttA/Hcf106 family
          Length = 260

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  NGPEDSVSYKIYT-KDYLKTYDEQLKDLYDENGKRKDGRELNE 180
           N P DS S K YT +DYLK  +EQLK L     + +D  +  E
Sbjct: 186 NDPNDSQSPKAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQE 228


>At3g46210.1 68416.m05002 3' exoribonuclease family domain
           1-containing protein similar to SP|Q9NQT4 Exosome
           complex exonuclease RRP46 (EC 3.1.13.-) (Ribosomal RNA
           processing protein 46) {Homo sapiens}; contains Pfam
           profile PF01138: 3' exoribonuclease family, domain 1
          Length = 239

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +1

Query: 154 RKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQ 333
           R+DGR  N+ R +       +++ +  GSA      TKV+ +V+ P+    +NE  +  +
Sbjct: 5   REDGRTPNQLRPLA---CSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE--K 59

Query: 334 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 513
              EV + P      +   +  V EK   + L++ ++        PN    V+I ++  D
Sbjct: 60  ACFEVIWKP------KSGQIGKV-EKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDD 112

Query: 514 GS 519
           GS
Sbjct: 113 GS 114


>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
           putative similar to polynucleotide phosphorylase
           GB:AAC50039 [Pisum sativum], identical to putative
           polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
           thaliana]
          Length = 922

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
 Frame = +1

Query: 142 ENGKRKDGRELNEARSMCMFFARTDMVSQAKGSAYVELRKTK--VVCSVFD---PREIPH 306
           E GKR DGR L+E R +    +R  ++ +A GS      +T+   V ++ D    + I +
Sbjct: 443 EGGKRSDGRTLDEIRPI---NSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDN 499

Query: 307 QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPNYQI 483
                +  + Y +  F P S     R   P   E        +ALE  +     FP Y I
Sbjct: 500 LEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFP-YTI 558

Query: 484 DVLIYILEHDGS 519
            V   ++E +GS
Sbjct: 559 RVESTVIESNGS 570


>At5g27000.1 68418.m03221 kinesin motor protein-related
           non-consensus AT donor splice site at exon 12;
           non-consensus AC acceptor splice site at exon 13
          Length = 987

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 55  NGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRK 159
           N  +D+ SY+I  +  L+ Y+EQ++DL  ++G+ K
Sbjct: 514 NQRKDTTSYEISVQ-MLEIYNEQVRDLLAQDGQTK 547


>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
           identified as SEC22 by Raikhel, NV, et al. in Plant
           Physiol. 124: 1558-69 (2000); similar to vesicle
           trafficking protein gb|U91538 from Mus musculus; ESTs
           gb|F15494 and gb|F14097 come from this gene
          Length = 218

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 40  DFRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDGRELNE 180
           +F R NGP    + + Y      T+ ++ K LY +   +++  +LN+
Sbjct: 95  EFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLND 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,887,825
Number of Sequences: 28952
Number of extensions: 216224
Number of successful extensions: 524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)