Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d03
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 29 0.46
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 29 0.81
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 28 1.1
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 1.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 27 3.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.3
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 7.6
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 25 7.6
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 25 7.6
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 25 7.6
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 25 7.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 10.0
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 10.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 10.0
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 25 10.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 10.0
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 476 IFCSLQHH*TSPSAFQEFLIFQAYFHIPTYY*FLVPF 366
IF S H + F +F +YFHIP + F+ PF
Sbjct: 7 IFLSCSHR-VIQAKHPPFPLFHSYFHIPDFLSFVFPF 42
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.81
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 365 HQIYPVLSN*TWVTILHVAILL*VQFPKNLHL*QGLR 255
H +YP LS WV + H+ L +Q K H Q LR
Sbjct: 198 HVLYPFLSGGMWVFVRHIFQFLKLQ-EKGFHFGQSLR 233
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 521 SDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKR 625
S ++NLQN++ L+ E+E ++R +++S R
Sbjct: 641 SQLENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 515 KASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLD 652
++++VQ L++ LES K E V +KN I G LK+ ++
Sbjct: 400 QSANVQKLESTNRALESTIKTLEEDVYTMKNKIIELEGILKSANVE 445
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 482 RPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAK 622
+P + ++ AQ +A + L+ Q+ L KEYEMR +++N +AK
Sbjct: 1174 KPWIDEIAAQREAYAGKILRYQR-----LTKEYEMRAEQIRNDYAAK 1215
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = -1
Query: 420 NFSGILSYSHILLISCTISSNIPCFKQLNMGNHFTRRNFALGTVSKKSSSLTRFTMFPNS 241
NFS I S +L IS N P K LN+GN + + + K+ L R + PN
Sbjct: 126 NFSNIFSLPANILEY--ISDNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRL-IIPNC 182
Query: 240 FNMTRLS 220
+T +S
Sbjct: 183 RKLTDVS 189
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 588 LISYSLAKDSSRDFWFCKFCTSLAFICAFTS--PNCGLHNFLQSPTSLNFSFCFSRISNF 415
L+ Y A+D SR + T FI F+S C +F + + LNF FCF
Sbjct: 750 LLCYRRAEDDSRILTIIESWT--IFISRFSSVISRCSFTDF-EINSILNFFFCFLHTVEP 806
Query: 414 SGILSY 397
SG L++
Sbjct: 807 SGKLTF 812
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 137 ISVEKIKMSENLADLENDVEMLNSEVPFDNLVILKEFGNIVNLVKDEDFLETVPKAKLRR 316
++ EK++ S LA L+ V+ L SE P+ + ++K+F NI KDE ET + L
Sbjct: 73 VTNEKLRESRRLA-LQAYVQCL-SETPWIKMPVVKKFLNI----KDESEDETQGQF-LGP 125
Query: 317 VKWLPMFNCLKQGI 358
W+ +F K+ +
Sbjct: 126 TDWIQVFQDCKRNL 139
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 176 DLENDVEMLNSEVPFDNLVILKEFGNIV 259
D+E+++ ++N+ +PF ++ +FGN +
Sbjct: 281 DIEDNINLINTILPFSVTLMKNKFGNFL 308
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 333 CLIA*NRVYLMKWYKKSVICGNMKVC 410
C + +R LM+W + CGN VC
Sbjct: 2556 CSLCDSRFSLMEWRSQCRACGNSNVC 2581
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 316 TSQFCFRYSFQKIFIFDKVYD-VSEFFQYDEIIE 218
T + F+Y K+ + D V+D + F +D I E
Sbjct: 594 TDSYFFKYHLHKVVVSDNVHDPAASFSTFDGITE 627
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +2
Query: 536 LQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLDLQKY 664
L+NQ +++ +++ + R ++ + +R +K+L+ D KY
Sbjct: 2034 LRNQLEDVQASETQWKFALRRTEHALQEERERVKSLETDFDKY 2076
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 420 NFSGILSYSHILLISCTISSNIPCFKQLNMGNHF 319
N I +YS I+L+S N+P F N+ HF
Sbjct: 90 NNKQIYTYSGIVLVSINPYQNLPEFYNDNLIKHF 123
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 171 KFSLIFIFSTLIAIKIDRNT*FKIHITQNYNSLRNNHNYFIYFVWPSVRLFQTFF 7
++ L+ I+ LI ID+N K ++ N N N F +W + ++ F
Sbjct: 77 RWPLLIIWCILIVFAIDKNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLF 131
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 171 KFSLIFIFSTLIAIKIDRNT*FKIHITQNYNSLRNNHNYFIYFVWPSVRLFQTFF 7
++ L+ I+ LI ID+N K ++ N N N F +W + ++ F
Sbjct: 97 RWPLLIIWCILIVFAIDKNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLF 151
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 171 KFSLIFIFSTLIAIKIDRNT*FKIHITQNYNSLRNNHNYFIYFVWPSVRLFQTFF 7
++ L+ I+ LI ID+N K ++ N N N F +W + ++ F
Sbjct: 77 RWPLLIIWCILIVFAIDKNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLF 131
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +2
Query: 533 NLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLDLQKY 664
NL+ +++ L+S K Y + + + +K+G K + Q +
Sbjct: 1334 NLREKRAFLDSQLKSYNEYIEQAMETLQSKKGKKKLIPFSKQYF 1377
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 171 KFSLIFIFSTLIAIKIDRNT*FKIHITQNYNSLRNNHNYFIYFVWPSVRLFQTFF 7
++ L+ I+ LI ID+N K ++ N N N F +W + ++ F
Sbjct: 77 RWPLLIIWCILIVFAIDKNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLF 131
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 242 EFGNIVNLVKDEDFLETVPKAKLRRVKWLPMFNCLKQGIFDEMVQEISNMWE 397
EFGN + +ED E P+A + +P F ++ I DE ++++ E
Sbjct: 8 EFGNYIGPENEEDEEELFPQAPSPTIAQVPSF---EEVIPDEELEDVERAEE 56
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 280 IFIFDKVYDVSEFFQYDEIIERDFRIQHFNI 188
I IFD+ + FQY ++ + R + FN+
Sbjct: 1016 IGIFDQFVSAGQLFQYPQLYQLGQRSEFFNL 1046
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 512 MKASDVQNLQNQKSLLESLAKEYEMRVNRLKN 607
MKA D+ + Q S +SL K Y+ R+ RL N
Sbjct: 1 MKALDIDTILTQISNQQSLDKRYK-RIKRLIN 31
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 10.0
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = -1
Query: 366 SSNIPCFKQLNMGNHFTRRNFALGTVSKKSSSLTRFTMFPNSFNMTRLSKGTSE--FNIS 193
S+ P +++N R+ + V++ SS + + S + L TS FN +
Sbjct: 343 SATAPQQEKINPQKTVRRQRAIIDPVTELSSKQMKKQLADTSSITSPLCLNTSSIVFNAT 402
Query: 192 TSFSRSAKFSLIFIFSTLIAIKID 121
+F+R+ KF+ IFS+ + K++
Sbjct: 403 VNFTRNGKFN-TSIFSSNLNPKVN 425
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 10.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 464 DCKKLWRPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKAL 643
+C L +L D Q K S +L N S+L + + +KN++ + YL+AL
Sbjct: 494 ECISLTYRKLPDSWKQDKCSGRDDLDN--SVLNDDYISVAPKPSHVKNIMHHENQYLQAL 551
Query: 644 QL 649
QL
Sbjct: 552 QL 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,688
Number of Sequences: 5004
Number of extensions: 52023
Number of successful extensions: 208
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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