Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d03
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 31 1.1
08_02_0761 - 20889724-20889849,20889894-20890055,20890307-208904... 29 4.5
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 29 4.5
04_01_0630 - 8354628-8355803,8355837-8355926 29 4.5
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 28 7.8
04_04_1152 - 31289365-31289457,31289559-31289637,31289716-312897... 28 7.8
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 28 7.8
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +2
Query: 131 IAISVEKIKMSENLADLENDVEMLNSEVPFDNLVILKEFGNIVNLVKDEDF-LETVPKAK 307
I + +K ++ + L D E + ML ++ N V+ K + KD D L T + +
Sbjct: 529 IQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERR 588
Query: 308 LRRVKWLPMFNCL---KQGIFDEMVQEISNMWEYESM 409
+ R L M + ++G+F+ +++EI W+++ +
Sbjct: 589 IFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEV 625
>08_02_0761 -
20889724-20889849,20889894-20890055,20890307-20890406,
20890597-20890604
Length = 131
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 476 LWRPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRL 601
+WR LG Q+ DV++LQN +S LE K +R L
Sbjct: 1 MWRQLLGQ---QLSGLDVEDLQNLESKLEMSLKNIRLRKGSL 39
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 467 CKKLWRPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYE 583
C R LG++ +M DVQ L+ Q +L E++A+ E
Sbjct: 846 CSSSSRWDLGEITRRMDTLDVQTLKIQYNLTENIAQTQE 884
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 497 DVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLK 637
D MK D ++ NQK L L + M NRL +S K GY K
Sbjct: 13 DFDIYMKVPDGIDIPNQKKSLYGLKQSGRMWYNRLSEFLSLK-GYTK 58
>09_06_0311 +
22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 518 ASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKA 640
AS N + +S A YE++ +RL IS +GYL A
Sbjct: 367 ASSTVEFWNLSQVPDSSAGSYEVQTSRLLTPISKGKGYLDA 407
>04_04_1152 -
31289365-31289457,31289559-31289637,31289716-31289758,
31289846-31290037,31290302-31290377,31290482-31290535,
31291274-31291342,31291437-31291700
Length = 289
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 155 KMSENLADLENDVEMLNSEVPFDNLVILKEFGNIVNLVKDEDFLETVPKAK 307
KM+ NLA LE + L + DNL+ L E G+ + + + VP K
Sbjct: 104 KMARNLAKLEAFKKQLMKSLSEDNLLQLSEIGDDRDFDANNNLTARVPSWK 154
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 524 DVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLDLQK 661
DV+ QN+ + + SL +EM+ R+K + S R Y + L+ D K
Sbjct: 315 DVRERQNRLAKMRSLLFRHEMKAKRIKKIKS--RTYHRMLKKDKLK 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,337
Number of Sequences: 37544
Number of extensions: 258021
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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