Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d03
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.64 
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   1.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        30   1.5  
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)           29   4.5  
SB_45333| Best HMM Match : Metallothio_PEC (HMM E-Value=6.8)           28   6.0  
SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 488 QLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLDLQK 661
           +L DVK      +  N +N++   ESL ++   +   LKN  +A +  + AL+ +L +
Sbjct: 34  ELKDVKLSAMTENYHNEKNKRKTAESLFEDERTKNTELKNSCNALQEQIAALEFELDE 91


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +2

Query: 452  NDVGDCKKLWRPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRVNRLKNVISAKRGY 631
            N V +  +L R       AQ  +S +  L+ Q      +A EY+ R+ RL+N I A R  
Sbjct: 1634 NRVPELNRLLRETRDLYAAQSASSPLAELREQVREQRVMAAEYKGRIERLRNEIRAVRRL 1693

Query: 632  LKAL 643
            + +L
Sbjct: 1694 VHSL 1697


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 542  NQKSLLESLAKEYEMRVNRLKNVISAKRGYLKALQLDLQKY 664
            +QKS L  +   YE+++  LKN    K+  ++ L++ + KY
Sbjct: 1882 SQKSKLYEINDRYELQIAELKNDNEIKQDKIEQLEISISKY 1922


>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
          Length = 614

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 240 FNMTRLSKGTSEFNISTSFSRSAKFS 163
           +NMTRL+KG+ +  + +SF    +FS
Sbjct: 427 YNMTRLTKGSCQCTVGSSFIMITRFS 452


>SB_45333| Best HMM Match : Metallothio_PEC (HMM E-Value=6.8)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 510 CAFTSPNCGLH--NFLQSPTSLNFSFCFSRISNFSGILSYSHILLIS-CTISSNIPCF 346
           CAF S NCG      L   T +  + C +R ++  GI SY++ LL   C  S + P +
Sbjct: 55  CAFPSQNCGASRVQVLTGYTRIR-TACCTRCASAHGIDSYTYGLLYQVCKCSRDRPVY 111


>SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 369 ISSNIPCFKQLNMGNHFTRRNFALGTVSKKSSSLTRFTMFPNSFNMTRLSKGTSEFNIST 190
           +S+NIPC +   +   F    + + T +  S + T FT FP+       +  +  + +ST
Sbjct: 91  VSTNIPC-ETYTVSTSFLDEIYTVST-NFPSETYTVFTNFPSEIYTVSTNFPSETYTLST 148

Query: 189 SFS-RSAKF 166
           +F  +S +F
Sbjct: 149 NFPVKSTRF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,970
Number of Sequences: 59808
Number of extensions: 329969
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)