Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d03
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13050.1 68414.m01513 expressed protein                             29   2.8  
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi...    28   6.6  
At3g10440.1 68416.m01252 hypothetical protein                          28   6.6  

>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 462 PTSLNFSFCFSRISNFSGILSYSHILLISCTISSNIP 352
           P  LN    F   SN   ++ YS+ L   C+IS N P
Sbjct: 267 PVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTP 303


>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 449 FNDVGDCKKLWRPQLGD--VKAQMKASDVQNLQNQKSLLESLAKEYEMR 589
           F   G CKK W  + GD   KA    +   + Q+Q  + E L+KE  +R
Sbjct: 192 FETQGSCKKEWTERSGDSESKAYGWCARADDFQSQGPIGEYLSKEGTLR 240


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 470 KKLWRPQLGDVKAQMKASDVQNLQNQKSLLESLAKEYEMRV 592
           K +  P +   + + K  D+ NLQNQK+L+   AK  +  +
Sbjct: 26  KMVLEPPMNSAQRR-KLGDITNLQNQKNLMNQGAKHQQQAI 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,531
Number of Sequences: 28952
Number of extensions: 242831
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)