Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d02
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)            29   4.5  

>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 110  IKYCSYFTHRGKGSDFQYLVMG 175
            I  C+YFTHRG+G    Y+V+G
Sbjct: 1266 ILLCNYFTHRGRGK--AYVVLG 1285


>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
          Length = 380

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 158 QYLVMGDEMDPCECLWNHELAMRRLISLLRQGQSYCTESECLEQLPGLPQP 310
           QY + GD+ D  + L +H+++  RLI+ L Q  S     EC   L  L  P
Sbjct: 26  QYNIQGDDSDDDDDL-DHDMSTERLINQLLQVLSSGVSEECPICLDPLDDP 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,467,416
Number of Sequences: 59808
Number of extensions: 425428
Number of successful extensions: 1013
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)