Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d02
         (664 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   0.92 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    26   1.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   1.6  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   8.6  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 324  LPADSGCGSPGNCSRHSLSVQY 259
            LP D+  G PGNC   ++ + Y
Sbjct: 1822 LPPDNDKGYPGNCGSSTIGITY 1843


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 386  RRNQIQDAAKPAHNPHDRDGAPPTPP 463
            RRN  + AA        R G PPTPP
Sbjct: 1110 RRNANRRAATARRREERRAGLPPTPP 1135


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 386  RRNQIQDAAKPAHNPHDRDGAPPTPP 463
            RRN  + AA+       R G PP+PP
Sbjct: 1047 RRNASRRAARARQRELQRAGRPPSPP 1072


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 247 SRPIVLHGKRMPRAITRASAAGVGWQQLHHDVR 345
           +R I L  K +    TRA+AA V   Q H + +
Sbjct: 264 ARIITLTPKNVGSEATRATAAAVASDQAHREAQ 296


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,864
Number of Sequences: 2352
Number of extensions: 15675
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)