Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c24
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 111 8e-26
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 109 3e-25
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 42 5e-05
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 32 0.076
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 28 1.2
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.8
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 111 bits (267), Expect = 8e-26
Identities = 60/115 (52%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Frame = +2
Query: 35 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 214
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60
Query: 215 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLSHLEGN--SFWRLQK*RKCTK 373
G FP+VL +V+PGDHV+ L E F R K C+K
Sbjct: 61 GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSK 115
Score = 71.7 bits (168), Expect = 8e-14
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +3
Query: 330 GTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVXDM 506
G+AFGG K R +P VDEY++ +DE++T+ PLK IN+AF MH GK IR V DM
Sbjct: 317 GSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDM 375
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 109 bits (262), Expect = 3e-25
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +2
Query: 41 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 220
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65
Query: 221 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 316
FPV+L T+V+ GD V+ L
Sbjct: 66 FPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
Score = 78.2 bits (184), Expect = 9e-16
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = +3
Query: 318 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 497
R W+G AFGG K R +P LV EYL+ KL +D+++TH PLKEINEAF MH G I+ V
Sbjct: 317 RVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTV 376
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 42.3 bits (95), Expect = 5e-05
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 59 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 229
K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P P+
Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65
Query: 230 VLXXXXXXXXXXXXXXXTSVKPGDHV 307
+ T +K GD V
Sbjct: 66 IGGHEGAGVVVKVGAGVTRLKIGDRV 91
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 31.9 bits (69), Expect = 0.076
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 98 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 235
+ I+ + + PK GE+ VKI A + +D +G P V+P ++
Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 441 KEINEAFHLMHAGKSIRAVXDM*FLRKNIY---TIFVHLLNLFSSAFTTSIIKIPQ 599
K +N F L H K+ + DM ++RKN Y + L N S + T +PQ
Sbjct: 444 KLLNLTFELQHLRKTSKNDEDMSYVRKNSYNTNALANSLKNRVLSTYNTVKANVPQ 499
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 59 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 169
K ++ +AWE KPL + E+I D +GE+ V T +G
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 399 SSPSTHLQALVH-FLYFCNLQKLFPSRCD 316
SSPS+ L+ F Y CN+ KL+ + D
Sbjct: 914 SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 525 IYTIFVHLLNLFSSAFTTS 581
IYT+F HLLN++ S
Sbjct: 1720 IYTLFEHLLNIYKETINDS 1738
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,119
Number of Sequences: 5004
Number of extensions: 49795
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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