Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c24
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   7e-23
SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)             83   1e-16
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   3.0  
SB_19367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   9.2  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  27   9.2  
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  27   9.2  
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 27   9.2  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score =  104 bits (249), Expect = 7e-23
 Identities = 51/80 (63%), Positives = 54/80 (67%)
 Frame = +2

Query: 56  IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 235
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61

Query: 236 XXXXXXXXXXXXXXXTSVKP 295
                          T VKP
Sbjct: 62  GHEGGGIVESVGEGVTKVKP 81


>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +3

Query: 318 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 482
           R WKGTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L +INEAF LMH G+
Sbjct: 60  RVWKGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLDKINEAFDLMHRGE 114


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 77  AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 196
           AW  G  L ++   V P  A  +  +IT TG   T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +3

Query: 69  PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKILRECFL*YWDMKA 248
           P+SR  +  R  S   +    + V C  +     +A+L ++   + + R+C   YWD   
Sbjct: 462 PESRDPEVIRAQSDAERSRLLEDVSCMEQFGEKWAAVLDKVLPTKPVFRKC---YWDDSE 518

Query: 249 AESWRVSVRESLQSS 293
             ++ + +R +++ +
Sbjct: 519 GRAFEIHLRRAIKGT 533


>SB_19367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 411 LKAASSPSTHLQALVHFLYFCNLQKLFPSRCDRGTTWSP 295
           ++ + +P TH QAL   L      KL+P   D GT+ SP
Sbjct: 54  IRVSENPQTHHQAL---LLLSTAAKLYPCSTDAGTSSSP 89


>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 57  LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 194
           L+  P +RG Q +    R  KW  + P KC ++ +  E A++ R+H
Sbjct: 8   LTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 165 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 19
           V+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 3   VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 69  PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKI 209
           P+ R +  SR P R    +  +  +   RSR P+S + +R  SP +I
Sbjct: 295 PRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRI 341


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 69  PQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 203
           PQ + KQASR     LK    KP  +    SRP ++++ T+   P+
Sbjct: 62  PQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107


>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 315 CRTWKGTAFGGYKSRESVPKLVDE 386
           CRTWK  A    +S+ + PKL+D+
Sbjct: 277 CRTWKARALYKEQSKFAEPKLLDK 300


>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 195 SVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 46
           S  AS  ++PV  +++R   + G S  ++   SG P   A   +  I +P
Sbjct: 321 SASASCSKSPVRPMVSRRIASAGSSQGVTPRQSGTPTQGAQPKRRSIAMP 370


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 327  KGTAFGGYKSRES-VPKLVDEYLEKKLPLDEFVTHNV 434
            K ++ GG ++RES V K+ D+ LE KLP ++++ H V
Sbjct: 973  KDSSSGGGETRESIVHKMADDMLE-KLP-EDYIQHEV 1007


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,038,799
Number of Sequences: 59808
Number of extensions: 390329
Number of successful extensions: 1071
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)