Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c24
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.34 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.34 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 390 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 491
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 390 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 491
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 390 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 491
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 132  KPVKCALRSRPPESAILTRIHSPEKIL 212
            + + C LR+  P   +L  +H+  ++L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRRVL 1128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 225  GNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTS 115
            G   S +F +  +A+   +P   +L R SPAF G++S
Sbjct: 900  GEPTSAAFAQG-FATAASSPG--LLERASPAFSGTSS 933


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 537 FVHLLNLFSSAFTTSIIKIPQHAFC 611
           F +LLN  +    T+++K+ ++ FC
Sbjct: 29  FSYLLNCKNYDHPTTLLKLKRYLFC 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,269
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)