Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c22
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    31   0.93 
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical...    30   1.6  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +2

Query: 401 GGFKHCISTCLDVILKYLPKAGPVICGAVERDVNREKAFLFVKNCGGDWI 550
           G F + ++  + + L  + K+  ++     +  N+ + +LF+++C  DWI
Sbjct: 180 GVFTNVLNVSIAIKLYLISKSSNLLSSRASKTRNKNRVYLFLQSCFQDWI 229


>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.12 protein.
          Length = 1137

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 588 VQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAPQITGPALGRYFKI 439
           ++Q S   E  +GI++        +  SL T  S  P I GP +G+  KI
Sbjct: 300 LEQYSRLVENSLGIETSEMIKETLRIHSLATKLSNLPSIVGPLVGKIDKI 349


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 225 NPPKNSTKSTMMSSRVSVGCSCPSKWASKKVDAVD 329
           NP +NS   TM+    +  C+C   W  ++ +  D
Sbjct: 169 NPCQNSGNCTMVLENSNYLCTCSPDWQGRRCEVAD 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,849
Number of Sequences: 27780
Number of extensions: 246790
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)