Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c21
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   152   4e-38
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.48 
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.4  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   3.4  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   4.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   5.9  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  152 bits (369), Expect = 4e-38
 Identities = 82/173 (47%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
 Frame = +3

Query: 75  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTD 251
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 252 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 431
              E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 432 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEENF 590
           +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  E F
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 270 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 416
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 548 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 456
           WY++T K+SI    N+  + +R P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 112  ISSPVIMSL*IFILMDWRRLKII 44
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 134 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 24
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 177 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 320
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 610 NSIIPNWRLDTFVFFIYLSIMSRI 681
           N++   WR+  F FF+Y+ I S I
Sbjct: 251 NAVANGWRISPFRFFLYVFIASFI 274


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 546 VFAYHQSLYIPSWQPC-HHN 490
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 631 ASXELLSYFLXNI*KFSSSRPCLKNIMIGICVPSKSLY 518
           AS ELL+        FS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 290 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 192
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 470 ELKFLKPAEDVFHYFVHVCFKYFNLVR 390
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,072
Number of Sequences: 5004
Number of extensions: 55438
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)