Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c20
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.9  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   9.1  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 351 ISYLDG*A-HSPPGVKWLLEPIDIRNVNAPPTLRSSKVSSLVTTAA--SPFKPKR 196
           +S++D  A H+ P     L+ +   N N  P LRS K+S  + T+A  SP + KR
Sbjct: 173 MSFMDSSALHTSPAFSERLKLLSSSN-NFSPQLRSPKISHRLQTSATSSPLQHKR 226


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 330 AHSPPGVKWLLEPIDIRNVNAPPTLR 253
           A  PP +K    P+DI+N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 297 EPIDIRNVNAPPTLRSSKVSSLVTTAASPFKPKR 196
           EPI  R    PP ++SS  S   T    P KPKR
Sbjct: 119 EPIIKRKRGRPPKIKSSSPS---TKLDDPLKPKR 149


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 304 PLNTRWAVSSSIQIRNKK----KGERTKIFFFFCYTFDL 408
           PL++ WA S+++++++ K    +GE T++      TFD+
Sbjct: 290 PLSSLWASSTALKLQSMKTSSAQGETTEVSIRVDRTFDI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,106
Number of Sequences: 5004
Number of extensions: 41279
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)