Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c20
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   2.3  
04_01_0128 + 1398190-1398480,1399245-1399505                           29   3.1  
06_02_0011 - 10569471-10572245                                         29   4.1  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 215 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSSKTSS 105
           H ++    LL GR R GGG + RGL   P  S  T +
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGA 318


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 209 SNRNALLLHGRNRQGGGTYPRGLTRGPTTSSKTSSP 102
           +  NA   HGR        PR ++  PTT++ +SSP
Sbjct: 57  NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTNPSSSP 92


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 456 HYHSSFLLPIY*WQLNQIE-CITKKKKNFCSLAFFFISYLDG*AHSPPGVKW 304
           H HS+   PI     NQIE  + K +KN   LA   +S       +PPG  W
Sbjct: 393 HIHSNQAAPIQNVNGNQIEEHLNKTRKNLLLLAILAVSLTYQSGLNPPGGFW 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,598
Number of Sequences: 37544
Number of extensions: 266821
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)