Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c20
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)                 30   1.4  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               30   1.4  
SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)                 28   7.3  

>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
          Length = 896

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -3

Query: 269 RHPP*EVLRSQV*LQRLPHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSSKTSSP 102
           RHPP           RLPHP+ R  +L   R           +   P TS++ S P
Sbjct: 463 RHPPRTTGPELACPNRLPHPTRRPGVLYRDRTPPSSANATNMVEEVPLTSTRPSMP 518


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 254 EVLRSQV*LQRLPHPSNRNALLLHGRNRQ 168
           + LR Q  +QR P P+ RN++ LHG   Q
Sbjct: 22  QALRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)
          Length = 348

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 408 QIECITKKKKNFC-SLAFFFISYLDG*AHSPPGVKWLLEPIDIRNVNAPPTLRSSKVSSL 232
           Q EC +KKK     S  +F    L   AHSPP     + PI  +  N P    S+  S L
Sbjct: 27  QRECRSKKKCEIVPSCPYFHHPLLH--AHSPPASANAVTPIPPQADNVPNPQASNIASVL 84

Query: 231 VTTAASP 211
             TA  P
Sbjct: 85  DKTAMMP 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,398
Number of Sequences: 59808
Number of extensions: 313166
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)