Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c20
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      28   6.4  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      28   6.4  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    28   6.4  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    28   6.4  
AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical...    27   8.5  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 289  RHPQRKCATHLEKF*GLKFSYNGCLTLQTETHYCFTAEIGRVVVPT--RADSQEVLPPVV 116
            RH +    T L+K   ++FS +   T   + H  F A   R V+PT  R D + VL   +
Sbjct: 1498 RHNEDLINTELQKKLRIRFSTSVMGTSACKAHLLFQAHFMRTVLPTDYRTDLKSVLDQCI 1557

Query: 115  KPLR 104
            + L+
Sbjct: 1558 RILQ 1561


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 324 SPPGVKWLLEPIDIRNVNAPPTLRSSKVSSLVTTAASP 211
           +PP ++  + P  ++   APPT+++++  S + T   P
Sbjct: 21  APPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMKTTKEP 58


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 303 LLEPIDIRNVNAPPTLRSSKVSSLVTTAASPFKPKRIT 190
           L EP     +N+ P LR   + S  T+ +SPF P   T
Sbjct: 591 LCEPSYFPIINSSPLLRRENLCSSTTSDSSPFAPFNCT 628


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 303 LLEPIDIRNVNAPPTLRSSKVSSLVTTAASPFKPKRIT 190
           L EP     +N+ P LR   + S  T+ +SPF P   T
Sbjct: 583 LCEPSYFPIINSSPLLRRENLCSSTTSDSSPFAPFNCT 620


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 303 LLEPIDIRNVNAPPTLRSSKVSSLVTTAASPFKPKRIT 190
           L EP     +N+ P LR   + S  T+ +SPF P   T
Sbjct: 591 LCEPSYFPIINSSPLLRRENLCSSTTSDSSPFAPFNCT 628


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 303 LLEPIDIRNVNAPPTLRSSKVSSLVTTAASPFKPKRIT 190
           L EP     +N+ P LR   + S  T+ +SPF P   T
Sbjct: 591 LCEPSYFPIINSSPLLRRENLCSSTTSDSSPFAPFNCT 628


>AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical
           protein Y77E11A.16 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 525 VVVKIFSIVSMIREDITIDYYCKHYHSSFLLPIY*WQLNQI 403
           +V  IFS++ +I+  ITI YY K Y+  F      W +  I
Sbjct: 282 LVYTIFSVIPLIQPIITI-YYIKPYNHGFRRLFCRWMVRPI 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,099
Number of Sequences: 27780
Number of extensions: 235628
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)