Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    31   0.005
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   7.2  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 0.005
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 132 ISLASYSKIMKTAWSYFTLLLNIYN 206
           + L ++ KIM+ AWS+FT L N+++
Sbjct: 318 LDLDTFKKIMQKAWSFFTALKNMHD 342


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 311  YTVHYRPQPG 340
            YT+HY+P+ G
Sbjct: 1429 YTIHYKPEFG 1438



 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 296  GSVPMYTVHYRP 331
            G V  YTV+Y+P
Sbjct: 1229 GIVEYYTVYYKP 1240


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 89  WSSDSNLEFPVLWITETD 36
           ++ D+NL   ++W  ETD
Sbjct: 337 YAKDNNLAGVMIWSIETD 354


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 135 SLASYSKI--MKTAWSYFTLLL 194
           +++++S I  M+T W +F + L
Sbjct: 398 TMSTFSDITFMRTVWKFFNIFL 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,079
Number of Sequences: 336
Number of extensions: 1944
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)