Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   0.42 
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   5.2  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    24   6.9  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    24   9.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   9.1  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 319 YCIHRHGANKLIYQTKIYISCFVRKPNSSSGNTFKLHLL 203
           YCI    + K++  ++  I C    PNS++   F  H++
Sbjct: 192 YCIFADSSEKMVVSSEEQIICISLNPNSAARPPFSHHIV 230


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 99  PSGMVIRFQFRIPCVMDNRD 40
           P  M   F FRIPC  +N D
Sbjct: 691 PRPMFTEFDFRIPCNTNNPD 710


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 6   IYIETYISMYVSLCYP*HREF 68
           +Y E Y+++YV  CY    +F
Sbjct: 79  LYYELYLTLYVCWCYKLRSDF 99


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 153 KIMKTAWSYFTLLLNIYNK*SLKVLPLDELGFL 251
           K + T+  +F LLL      + +++P+ E+GF+
Sbjct: 19  KALHTSIGFFALLLQGCGYHAAQIIPVIEIGFI 51


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 323 NVLYTSARSQQINLSN*NLHFMFRKE 246
           N  Y S + QQI L    LHF  RKE
Sbjct: 159 NPEYESMQHQQILLKKLKLHFPRRKE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,669
Number of Sequences: 5004
Number of extensions: 30580
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)