Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0386 + 3023552-3024944,3025639-3025701,3026274-3026355,302...    29   1.6  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    28   2.8  
02_05_0708 - 31103246-31103359,31104146-31104178,31104297-311043...    27   3.7  
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716...    27   4.9  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    27   6.5  

>05_01_0386 +
           3023552-3024944,3025639-3025701,3026274-3026355,
           3026671-3026798,3027192-3027205
          Length = 559

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 90  SQKGVSVTTFGF-SVISLASYSKIMKTAWSYFTLLLNIYNK*SLKVLP 230
           SQ G+      + +V+S  S+S ++K  W+YF L+ +  N  S+K+ P
Sbjct: 317 SQLGIKRDGVAYLAVLSACSHSGLVKEGWNYFKLMFHGQN--SVKMQP 362


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 374 FFIINEFLFNPAPAAAYNVLYTSARSQQINLS 279
           F    + + +PAPAA+ N+ +  A+ Q I+LS
Sbjct: 498 FAHFEQSMISPAPAASLNMHHVEAKCQNIHLS 529


>02_05_0708 -
           31103246-31103359,31104146-31104178,31104297-31104362,
           31104532-31104596,31105456-31105519,31105629-31105738,
           31105886-31105973,31106328-31106432
          Length = 214

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  SQKGVSVTTFGFSVISLASYSKIMK 164
           S +G  V    FS++S ASY  IMK
Sbjct: 76  SYRGADVFVLAFSLVSRASYENIMK 100


>09_02_0312 -
           7168332-7168408,7168492-7168621,7168793-7168861,
           7168947-7169066,7169356-7169440,7169565-7169650,
           7169762-7169914,7170008-7170130,7170974-7171357
          Length = 408

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 171 WSYFTLLLNIYNK*SLKVLP 230
           W  F +  NIYNK  LKV P
Sbjct: 115 WYLFNIYFNIYNKQVLKVFP 134


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 89   WSSDSNLEFP-VLWITET 39
            W++ SNL+FP  LW+ ET
Sbjct: 1512 WTTTSNLQFPHALWLLET 1529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,041
Number of Sequences: 37544
Number of extensions: 170439
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)