Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)                    29   1.3  
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)                27   6.7  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                26   8.8  
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                26   8.8  

>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
          Length = 180

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 182 EIRPRCLHDFTVTSQRNYRETERCHTN 102
           +I  +C   FT+T++ NYR   + HTN
Sbjct: 64  DICGKCFSRFTITTKYNYRHNYKHHTN 90


>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
          Length = 635

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 274 KIYISCFVRKPNSSSGNTF 218
           +I  SCF RKP+ SSG  F
Sbjct: 578 RIVGSCFSRKPSGSSGRAF 596


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 319  YCIHRHGANKLIYQTKIYISCFVRKPNSSSGNTFKLH 209
            YCI ++G NK      +Y+      P +++ + F LH
Sbjct: 2187 YCIPKNGENKYDPGRDVYVDYIEELPLANTPDVFGLH 2223


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 319 YCIHRHGANKLIYQTKIYISCFVRKPNSSSGNTFKLH 209
           YCI ++G NK      +Y+      P +++ + F LH
Sbjct: 147 YCIPKNGENKYDPGRDVYVDYIEELPLANTPDVFGLH 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,994
Number of Sequences: 59808
Number of extensions: 200656
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)