Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z77134-8|CAL64004.1|  115|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical
           protein B0001.1 protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 119 ERCHTNALLGWSSDSNLEFPVLWITETDI 33
           E C T  +L WS DSN+  P  ++TE  I
Sbjct: 140 ENCQTE-VLSWSVDSNVSVPPHYMTEASI 167


>Z77134-8|CAL64004.1|  115|Caenorhabditis elegans Hypothetical
           protein R09H10.8 protein.
          Length = 115

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 75  GIG*PSQKGVSVTTFG 122
           G G P+Q+GV +TTFG
Sbjct: 87  GFGFPAQRGVPITTFG 102


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 161 HDFTVTSQRNYRETER-CHTNALLGWSSDSN 72
           HDF++ ++ NY++ E  C  NA   W    N
Sbjct: 146 HDFSLETKNNYQQFETVCKLNATFRWYITEN 176


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 161 HDFTVTSQRNYRETER-CHTNALLGWSSDSN 72
           HDF++ ++ NY + E  C  NA   W    N
Sbjct: 147 HDFSLETKNNYHQFETVCKLNATFRWYITEN 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,583
Number of Sequences: 27780
Number of extensions: 163902
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)