Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   0.68 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   0.68 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   0.68 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   0.68 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.4  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 59  QGILNWNRMTIPEG 100
           QG++NWN+  IPEG
Sbjct: 65  QGVVNWNK--IPEG 76


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 59  QGILNWNRMTIPEG 100
           QG++NWN+  IPEG
Sbjct: 113 QGVVNWNK--IPEG 124


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 59  QGILNWNRMTIPEG 100
           QG++NWN+  IPEG
Sbjct: 113 QGVVNWNK--IPEG 124


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 59  QGILNWNRMTIPEG 100
           QG++NWN+  IPEG
Sbjct: 113 QGVVNWNK--IPEG 124


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 311  YTVHYRPQPG 340
            YT+HY+P+ G
Sbjct: 1399 YTIHYKPEFG 1408


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 110 HTNALLGWSS 81
           HT+ L+GWS+
Sbjct: 392 HTSVLIGWSA 401


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 285 INLLAPCRCIQYI 323
           +NL+ PC  I Y+
Sbjct: 240 VNLIVPCVSISYL 252


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 139  SEITEKPNVVTLTPFWDGH 83
            +E  +K +V+  TP  D H
Sbjct: 1389 NEYLDKADVIVNTPIMDAH 1407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,128
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)