Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c18
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    82   3e-16
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592...    69   3e-12
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736...    44   1e-04
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639...    32   0.48 
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    31   0.84 
01_06_1152 + 34939884-34941824                                         28   5.9  

>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
 Frame = +3

Query: 285 QWFKQKLDHSNPSDLRTWKQRYYVNDSFYDFK-NQGPVFLMIGGEGPADARWMVTGTWIN 461
           +W  Q+LDH +P+D R +KQRYY    F D+    GPVFL I GE   +    +   ++ 
Sbjct: 53  RWMDQRLDHFSPTDHRQFKQRYY---EFADYHAGGGPVFLRICGESSCNG---IPNDYLA 106

Query: 462 Y-AKKFNALYINLEHRFYGESHPTLDLSIKNLQFLSSYQALADLANF 599
             +KKF A  +  EHR+YG+S P   L+ +NL+FLSS QAL DL  F
Sbjct: 107 VLSKKFGAAVVTPEHRYYGKSSPFESLTTENLRFLSSKQALFDLVAF 153


>10_08_0605 +
           19158167-19158309,19158726-19158834,19159099-19159224,
           19159388-19159543,19159623-19159805,19159904-19160020,
           19160528-19160581,19160661-19160732,19160947-19161058,
           19161188-19161284,19161434-19161528,19162093-19162167,
           19162307-19162390,19162602-19162700,19163167-19163207
          Length = 520

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +3

Query: 321 SDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWINY-AKKFNALYINL 497
           +D R +KQRYY    +Y    +GP+FL I GE   +    +  +++   AKKF A  ++ 
Sbjct: 84  ADHRQFKQRYYEFLDYYRAP-KGPIFLYICGESSCNG---IPNSYLAVMAKKFGAAVVSP 139

Query: 498 EHRFYGESHPTLDLSIKNLQFLSSYQALADLANF 599
           EHR+YG+S P   L+ +NL+FLSS QAL DLA F
Sbjct: 140 EHRYYGKSSPFESLTTENLRFLSSKQALFDLAVF 173


>06_03_0934 -
           26073084-26073220,26073296-26073345,26073465-26073634,
           26073651-26073803,26073877-26074032,26074227-26074350,
           26075066-26075178,26076336-26076469,26077391-26077578,
           26077718-26078139
          Length = 548

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
 Frame = +3

Query: 288 WFKQKLDHSN--PSDLRTWKQRYYVNDSFYDFKNQGPVFLMIGGEGPADARWMVTGTWIN 461
           +F Q+LDH    P+    + Q+Y VND+F+             GE PA   ++ TG   +
Sbjct: 86  YFPQELDHFTFTPNASAVFYQKYLVNDTFWRRS-------AAAGETPAGPIFVYTGNEGD 138

Query: 462 YAKKFNALYINLEHRFYGESHP---TLDLSIKNLQFLSSYQALADLANFISS 608
              K        +HRFYGES P     + S + L +L+S QALAD A  I+S
Sbjct: 139 IECK--------QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITS 182


>07_02_0006 -
           11663297-11663308,11663587-11663783,11663860-11663948,
           11664087-11664166,11664747-11664851,11664951-11665031,
           11665135-11665218,11665352-11665449,11666203-11666297,
           11666380-11666453,11666549-11666826,11666920-11667190
          Length = 487

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +3

Query: 390 PVFLMIGGEGPADARWMVTGTWINYAKKFNALYINLEHRFYGESHPTLDLSIKNLQFLSS 569
           P  ++  G GP+ A W +   W    +K N +  + E +  G++   LD ++K L  + S
Sbjct: 193 PAKVLDFGAGPSSALWAMRAVWPKSIEKVNLVEPSKEMQRAGKN--LLD-NLKGLPLIHS 249

Query: 570 YQALADLANFISS*NRSSD 626
           Y ++ +L   I    R  D
Sbjct: 250 YDSIQELNRNIEKHERRHD 268


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
 Frame = +3

Query: 492 NLEHRFYGESHP--TLDLSI---KNLQFLSSYQALADLA 593
           +L+HR+YGES P  + D +    K+L +L++ QALAD A
Sbjct: 158 SLQHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYA 196


>01_06_1152 + 34939884-34941824
          Length = 646

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 141 NMKLYTILFNLYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQKLDHSNP 320
           N+  Y ++ N+Y     +DGV K        G    PG  Y  +      F    DHS+P
Sbjct: 475 NVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMAD-DHSHP 533

Query: 321 SDLRTWK 341
              R ++
Sbjct: 534 QARRIYE 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,399
Number of Sequences: 37544
Number of extensions: 361920
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)