Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c15
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   0.96 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   3.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   5.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   5.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 381  LYLYFEIIYSTIGFAYSLAFINKETAS 461
            LY++F++ +ST G A + A  N +TAS
Sbjct: 1342 LYMFFQMYFSTFGQAVASACPNAQTAS 1368


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 352 SATTKTVVMVTSINKATVSTINRINSDAIS 263
           S++T TV++ TS+N   VS+   + S +I+
Sbjct: 194 SSSTNTVILTTSVNSPAVSSSETLTSVSIT 223


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +2

Query: 44  SNRKHVGNTSK*SKRENQGISGDTNSNKML 133
           SN+KH+GN S+ +  + +G + D +SN++L
Sbjct: 223 SNQKHLGNESE-NFNDMEGRAEDISSNELL 251


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 324 TMTTVFVVALHKKHVLLMKL 383
           T TTVF++ALH+  +L+  L
Sbjct: 417 TQTTVFLMALHRLEILVQAL 436


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 78  YFEVLPTCLRLELNSRLPHFTFA 10
           ++ VLP CL +  ++ LP   FA
Sbjct: 36  HYRVLPACLNIYFSNLLPELAFA 58


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  KRENQGISGDTNSNKMLFLFPATERSHR 166
           K+ENQ I   TN N M  +FP ++R  R
Sbjct: 489 KKENQEIKKFTNQNNM--VFPTSDRDTR 514


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 310 KATVSTINRINSDAISCCCCCEEFLITEMYSDKNDVTTKVRI 185
           K T +T   INS  +S  CC   F  T      +D+T  V +
Sbjct: 37  KITATTYALINSVIVSNNCCNRRFHSTWQKKKHDDLTATVPV 78


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 327 MTTVFVVALHKKHVLLMKLYLYFEIIYSTIGFAYSLAFI 443
           ++   +  + KK V L  L L F + +    F Y +AF+
Sbjct: 569 LSIALLYLIEKKSVWLASLILGFSVHFKIYPFMYGIAFL 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,970
Number of Sequences: 5004
Number of extensions: 48928
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)