Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c15
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       31   0.57 
10_01_0218 - 2351191-2351319,2351782-2351985                           30   1.7  
04_04_0705 - 27406405-27406424,27406425-27409260                       29   4.0  
02_01_0017 - 112766-113650                                             28   7.0  
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335           27   9.2  
10_08_0050 + 14469879-14470072,14470620-14471094                       27   9.2  
05_01_0169 - 1170614-1172098                                           27   9.2  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    27   9.2  
02_02_0694 + 13013966-13014361                                         27   9.2  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 321 PRLTKPRCPLSTVSIPMPFPAAVAARSFLLRRCTVIKTTSLLKSGS 184
           P +  P   L  + IPMP PAA AA +  + +   ++T S L SGS
Sbjct: 658 PAVAPPAAALEAILIPMPPPAAAAAAAAPVPKKRKVRTASTL-SGS 702


>10_01_0218 - 2351191-2351319,2351782-2351985
          Length = 110

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 372 GEHVS--YAVRQRRPWSW*PRLTKPRCPLST 286
           GE V   Y    R PW W PRL  P  P +T
Sbjct: 6   GESVGSGYGRIHRMPWQWLPRLDPPNAPTAT 36


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -3

Query: 253 CCEEFLITEMYSDKNDVTTKVRIKFVYAKAMRPLRSGKQKQHLV 122
           CC   LI EM   ++   TK R  FV++K    L+S K+ +HLV
Sbjct: 493 CCIHDLIREMIVHRS---TKERF-FVFSKCTVTLKSSKKARHLV 532


>02_01_0017 - 112766-113650
          Length = 294

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 282 SIPMPFPAAVAARSFLLRRCTVIKTTSLLKSGSNSC 175
           S+P P PAA AARS   R   V++     ++G   C
Sbjct: 255 SLPTPVPAAAAARSNKTRAVVVVRCGECNENGLVLC 290


>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
          Length = 776

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 285 VSIPMPFPAAVAARSFLLRRCTV 217
           VS+  PFP A AAR  LLR  ++
Sbjct: 27  VSLSRPFPCAAAARDSLLRGASI 49


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 5   ERANVKCGSREFNSNRKHVGNTS---K*SKRENQGISGDTNSNKMLFLFPA 148
           E A++ CG    +S+R + GN+S   +  +REN GI  +    ++    PA
Sbjct: 94  EGADLACGFTSTSSDRSNSGNSSEMLRFCRRENLGIGSELGGGELENAGPA 144


>05_01_0169 - 1170614-1172098
          Length = 494

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 358 LCSATTKTVVMVTSINKATVSTINRINSDAISCCCCCE 245
           L   +   +  +T+   A +  + R  +  +SCCCCC+
Sbjct: 160 LAGQSAHAMPALTASVDAALGEVARRVAAGLSCCCCCD 197


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 318 RLTKPRCPLSTVSIPMPFPAAVAARSFLLRRCTVIKTTSLLKSGSNSC 175
           RLT+ RC     S P+P P  + ++  L    T+I+ T+ L S   SC
Sbjct: 562 RLTR-RCRHRPPSKPLPPPPPLPSKPLLPGLPTIIEATAKLASHCRSC 608


>02_02_0694 + 13013966-13014361
          Length = 131

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 215 ITVHLRNKKLLAATA----AGNGIGIDTVDSGHRGFVNRGHHDH 334
           + +HL  +K+L A A    A +   + T D  H    + GHH H
Sbjct: 46  LALHLPTRKMLLAVASFDDASSPSSLTTTDRHHHHHRHHGHHHH 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,126
Number of Sequences: 37544
Number of extensions: 304737
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)