BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10c15 (627 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011) 28 5.4 SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 28 5.4 SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2) 28 7.1 SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4) 27 9.4 SB_36895| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.4 SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17) 27 9.4 SB_23002| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011) Length = 633 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -1 Query: 366 HVSYAVRQRRPWSW*PRLTKPRCPLSTVSIP 274 ++S + ++ P S P + + CPLSTVSIP Sbjct: 602 YLSKKIVKKEPKSKTPSMRQVYCPLSTVSIP 632 >SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) Length = 333 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 80 SKRENQGISGDTNSNKMLFLFPATERSHRFCIHEFD 187 SK+EN+ +S ++K L P TE + EFD Sbjct: 89 SKKENKQLSSPEETDKQFVLTPRTEAKYNKINEEFD 124 >SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2) Length = 148 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -3 Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275 +F +C++ + T+ ++ SI T++TIN IN+ Sbjct: 110 AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTINT 145 >SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4) Length = 171 Score = 27.5 bits (58), Expect = 9.4 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +3 Query: 126 RCCFCFPLRRGLIAFAYTNLILTLVVTSFLSLYISVI 236 RC C+P+ GL L++ ++V+ FL + +S+I Sbjct: 61 RCAVCYPVVEGLSQL----LLMAMIVSLFLGIVLSLI 93 >SB_36895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 70 Score = 27.5 bits (58), Expect = 9.4 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -3 Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275 +F +C++ + T+ ++ SI T++TIN +N+ Sbjct: 32 AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTVNT 67 >SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) Length = 3922 Score = 27.5 bits (58), Expect = 9.4 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = -3 Query: 217 DKNDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL*SVADMFTIR 44 D ++T +V+ + VY PL+ G + L IGI+T R + M+ +R Sbjct: 2988 DTCEITGRVKGRSVYLNGFGPLQIGGVETDLTFIGITTTGFRGCIRNIIDTEKMYDLR 3045 >SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1015 Score = 27.5 bits (58), Expect = 9.4 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = -3 Query: 211 NDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL 74 +D+T +V + KA R L + +Q L R G+STD++I +R L Sbjct: 746 HDLTWEVHCDSIVKKANRRLYAIRQ---LKRCGVSTDNIIVVYRSL 788 >SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17) Length = 554 Score = 27.5 bits (58), Expect = 9.4 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = -3 Query: 211 NDVTTKVRIKFVYAKAMRPLRSGKQKQHLVRIGISTDSLIFSFRLL 74 +D+T +V + KA R L + +Q L R G+STD++I +R L Sbjct: 371 HDLTWEVHCDSIVKKANRRLYAIRQ---LKRCGVSTDNIIVVYRSL 413 >SB_23002| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 73 Score = 27.5 bits (58), Expect = 9.4 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -3 Query: 382 SFIRRTCFLCSATTKTVVMVTSINKATVSTINRINS 275 +F +C++ + T+ ++ SI T++TIN +N+ Sbjct: 35 AFTSTSCYVQAIQLSTINVLQSIQSNTINTINTVNT 70 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,087,209 Number of Sequences: 59808 Number of extensions: 365564 Number of successful extensions: 999 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 993 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1560464625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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