Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c15
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.11 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 30/104 (28%), Positives = 44/104 (42%)
 Frame = +3

Query: 135 FCFPLRRGLIAFAYTNLILTLVVTSFLSLYISVIRNXXXXXXXEMASELIRLIVDTVALL 314
           F   LRR  + F   NLI+  V  SFLS+ +  + +          S L+ L V    LL
Sbjct: 228 FNITLRRKTL-FYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTV-FFLLL 285

Query: 315 IEVTMTTVFVVALHKKHVLLMKLYLYFEIIYSTIGFAYSLAFIN 446
            E+   T   V L  K       YL F ++  T+    ++A +N
Sbjct: 286 AEIIPPTSLTVPLLGK-------YLLFTMVLVTLSVVVTIAVLN 322


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 428 QPRLHQQGDSKRIILNFIPTDTANLLGNINMELNSEDGKRRFCKI 562
           +P  + +  S ++     P D+ NLLG +  E    DG    C++
Sbjct: 28  EPLDNDKEQSAQVCYRGAPQDSENLLGRVLAEF---DGTTVLCRV 69


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 538 IFTIELHINITK*ICSVSWNKIKNNSLAVSLL 443
           I T  +     K ICS  + KIK  ++ +SL+
Sbjct: 89  ILTFVVPHQFIKRICSALFGKIKPTAIGLSLI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,785
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)