Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c14
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    31   0.15 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   0.77 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.5  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   7.2  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   9.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.5  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 385 YVACIGPYPNIQAFLDQTQPGLLVDSEVLR---RRSLFHIP 272
           Y +C G   +++A LD    GL+++  VL    R SLF++P
Sbjct: 281 YTSCSGIVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLP 321


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
 Frame = +1

Query: 121 TKGSLRNGQDYFRDKRSQYGTYYTSPCGGASSAPIPTYPSAGYHGQAPAQA---GYGTNY 291
           T   L N  DY+    S YG Y  S    A   P P+   A   G+    A   G   N 
Sbjct: 118 TAAELLNAPDYYAS--SPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175

Query: 292 VYGGPH 309
           VY  P+
Sbjct: 176 VYHSPY 181


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 244 GYHGQAPAQAGYGTNYVYGGPHYRLADPAEFDP 342
           G +   P     G+  +Y GP+Y    P + DP
Sbjct: 78  GINYNGPTCCEPGSECIYNGPYYSQCIPVDIDP 110


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 184 KSRIANVCHGSNLARSSNSPLC 119
           KS+ +   HGSN    S+SPLC
Sbjct: 135 KSKWSFTKHGSNTPSDSSSPLC 156


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 208 ASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGPHYR 315
           A++ P+P  PS       PA+  Y  +Y  GG + R
Sbjct: 172 AANEPLPEVPSRFRSRSPPARRRYRDDYRRGGDYRR 207


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 58  WI-YFSITTTTMVVGAPSVLPD 120
           WI Y    TT++V G PSVL D
Sbjct: 325 WICYIFEITTSLVFGTPSVLSD 346


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 103 PSVLPD--TKGSLRNGQDYFRDKRSQYGTYYTSPCGG 207
           PSV P+     +++   D FR +    G Y  +P GG
Sbjct: 34  PSVFPEYPVHKAIQKTSDSFRKRNYSAGDYVIAPLGG 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,549
Number of Sequences: 5004
Number of extensions: 44820
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)